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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G21630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 450aa MW: 48820.4 Da PI: 6.4237 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.3 | 5.5e-27 | 293 | 342 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +edl++yF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl ORUFI01G21630.1 293 DHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 342 6899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.496 | 282 | 362 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.8E-21 | 295 | 342 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MEMHECCYYG GSIGGDWLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV 60 AGIGGACMTA DLVNLNGFDH VVIRDEEMEM AAGYLPVAAS AAAAADVDHY MYQQFQLEPD 120 QFVSTLPAVA VAVAATAGGG SHDDELLRMP FTDIDLDAFA DARDVVVGVG EPKPSPQHTL 180 DAAIALPAVG GGGAHHFGTQ DDDVKFDVTK QRNDAALAGD DSLSMVIVES YEMGMRRHAA 240 EQEQEQKPKI ITSAATTLTP LPLPPPPPPP PRVTRSRRDG SSAATAGGKT RLDHIGFEDL 300 RRYFYMPITK AAREMNVGLT VLKKRCRELG VARWPHRKMK SLKSLILNEM GSKGMSAAAM 360 RRELEALENC CALMERNPAV ELTERTKKLR QACFKENYKR RRAAAVDVLD LDHCFSFAAG 420 HCHRHHHQQL ALPPPPAAAA DHRRRDFFGY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003933 | 0.0 | AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06. | |||
GenBank | AP004258 | 0.0 | AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638205.1 | 0.0 | uncharacterized protein LOC107276829 | ||||
TrEMBL | A0A0E0MXX0 | 0.0 | A0A0E0MXX0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G21630.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12888 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 4e-31 | RWP-RK domain-containing protein |