PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G13230.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 869aa MW: 96716.3 Da PI: 6.963 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 118.4 | 3.4e-37 | 106 | 183 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gC+++ls+a++y++rhkvCevh+k+ vv ++++e+rfCqqCsrfh l+efDe+k+sCr+rLa+hn+rrrk q ORUFI01G13230.3 106 CCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRFHFLQEFDEGKKSCRSRLAQHNRRRRKVQV 183 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.5E-28 | 101 | 168 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.248 | 104 | 181 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-34 | 105 | 184 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.4E-28 | 107 | 180 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 4.02E-5 | 601 | 749 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.2E-4 | 612 | 748 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.61E-4 | 682 | 747 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 869 aa Download sequence Send to blast |
MSSGLKKKGL EWDLNDWRWD SNLFLATPSN ASPSKCSRRE LGRAEGEIDF GVVDKRRRVS 60 PEDDDGEECI NAATTNGDDG QISGQRGRSS EDEMPRQGTC SSSGPCCQVD GCTVNLSSAR 120 DYNKRHKVCE VHTKSGVVRI KNVEHRFCQQ CSRFHFLQEF DEGKKSCRSR LAQHNRRRRK 180 VQVQAGVDVN SLHENHSLSN TLLLLLKQLS GLDSSGPSEQ INGPNYLTNL VKNLAALAGT 240 QRNQDMLKNA NSAAIASHTG NYVAKGNSLH DSRPHIPVGT ESTAEEPTVE RRVQNFDLND 300 AYVEGDENRT DKIVFKLFGK EPNDFPSDLR AQILSWLSNC PSDIESYIRP GCIILTIYMR 360 LPNWMWDKLA ADPAHWIQKL ISLSTDTLWR TGWMYARVQD YLTLSCNGNL MLASPWQPAI 420 GNKHQILFIT PIAVACSSTA NFSVKGLNIA QPTTKLLCIF GGKYLIQEAT EKLLDDTKMQ 480 RGPQCLTFSC SFPSTSGRGF IENSCFLFQV EDLDQSSLSF PFVVAEEDVC SEIRTLEHLL 540 NLVSFDDTLV EKNDLLASRD RALNFLHEFG WFLQRSHIRA TSETPKDCTE GFPAARFRWL 600 LSFAVDREFC AVIKKLLDTL FQGGVDLDVQ STVEFVLKQD LVFVAVNKRS KPLIDFLLTY 660 TTSSAPMDGT ESAAPAQFLF TPDIAGPSDI TPLHIAATYS DTAGVLDALT DDPQQLGIKA 720 WKNARDATGL TPEDYARKRG HESYIEMVQN KIDSRLPKAH VSVTISSTTS TTDFTEKHAS 780 QSKTTDQTAF DVEKGQQIST KPPLSCRQCL PELAYRHHLN RFLSTRPAVL SLVAIAAVCV 840 CVGLIMQGPP HIGGMRGPFR WNSLRSGPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-25 | 98 | 180 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 58 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068471 | 0.0 | AK068471.1 Oryza sativa Japonica Group cDNA clone:J013155F18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614279.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Swissprot | Q9LGU7 | 0.0 | SPL1_ORYSJ; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A0E0MV01 | 0.0 | A0A0E0MV01_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G13230.3 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1998 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Publications ? help Back to Top | |||
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