PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ORUFI01G10030.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 341aa MW: 36343 Da PI: 8.6904

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G10030.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72	7.7e-23	44	90	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ ORUFI01G10030.2 44 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 90 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.097	27	112	IPR003035	RWP-RK domain
Pfam	PF02042	5.8E-21	45	90	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MASTAQPQQQ PQQQQEQQPV AAAAVPTPAP PASEAQPQKP TRVSLSYEEI SKLFSLPIAE 60 AASILGVCTS VLKRICRSHG IVRWPYRKLV SGKSGDDTKN AEREKAKGLL EISKVAKQKA 120 LSASGLSTVS LHQAPYDDLL SLLKRFAAFV LTLKSGHIDR SPGAFQGVAK SQQGSSKAGQ 180 VSPPGKQNVL GGSAILSYGT QTKGIPTYMD DFKYGFPSSG LSLQTMKWWG TDSHTETTPA 240 KDDNGEAPES ANEASKGMTD DELDWGADEA EAEADADSAI TTEPSAQLCS LRRKAVDDGR 300 KLLTGKSCGG LELCRLNKRQ KMALAQVFGA SLPEQLRSKL G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007789	0.0	AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence.
GenBank	AP003074	0.0	AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625714.1	0.0	uncharacterized protein LOC4326758
TrEMBL	A0A0E0MTU9	0.0	A0A0E0MTU9_ORYRU; Uncharacterized protein
STRING	ORUFI01G10030.2	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-10	RWP-RK domain-containing protein