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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G10030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 310aa MW: 32834.9 Da PI: 8.4577 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 72.2 | 6.7e-23 | 44 | 90 | 4 | 50 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ ORUFI01G10030.1 44 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 90 6899*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.097 | 27 | 112 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.1E-21 | 45 | 90 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MASTAQPQQQ PQQQQEQQPV AAAAVPTPAP PASEAQPQKP TRVSLSYEEI SKLFSLPIAE 60 AASILGVCTS VLKRICRSHG IVRWPYRKLV SGKSGDDTKN AEREKAKGLL EISKVAKQKA 120 LSASGLSTVS PGAFQGVAKS QQGSSKAGQV SPPGKQNVLG GSAILSYGTQ TKGIPTYMDD 180 FKYGFPSSGL SLQTMKWWGT DSHTETTPAK DDNGEAPESA NEASKGMTDD ELDWGADEAE 240 AEADADSAIT TEPSAQLCSL RRKAVDDGRK LLTGKSCGGL ELCRLNKRQK MALAQVFGAS 300 LPEQLRSKLG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK058984 | 0.0 | AK058984.1 Oryza sativa Japonica Group cDNA clone:001-020-E04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625714.1 | 0.0 | uncharacterized protein LOC4326758 | ||||
TrEMBL | A0A0D3ELQ3 | 0.0 | A0A0D3ELQ3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0MTU8 | 0.0 | A0A0E0MTU8_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q9ARR2 | 0.0 | Q9ARR2_ORYSJ; Uncharacterized protein OSJNBa0004G10.21 | ||||
STRING | OBART01G09250.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74480.1 | 3e-10 | RWP-RK domain-containing protein |