PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI01G08780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 388aa MW: 44087.3 Da PI: 6.7783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 7e-13 | 65 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46 +g+WT +E +l +++k++G ++Wk++ + g +Rt++++k++w++ ORUFI01G08780.1 65 KGPWTSWENSILEKYIKKHGERNWKLVQKNTGllrcgksCRRTDNEIKNYWNT 117 79******************************999998878999999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.595 | 60 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-12 | 61 | 121 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.05E-9 | 62 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-10 | 64 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-11 | 65 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.66E-9 | 67 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MRGHRSRVCG DGGLRSTCVR DRMHRSGSDP DSDRAHWYMS NSDDESFVDK DKDCRRGTVA 60 PLLKKGPWTS WENSILEKYI KKHGERNWKL VQKNTGLLRC GKSCRRTDNE IKNYWNTRIK 120 KCKNNRWLLY PANACNDALN EDQYGSVDPS VREKLTNNQL EDTTSMYSAP QFSYASISNI 180 LDRRLASKDY DSIEDQRNRI EVAAEYEISL PVLKTTNNDI FPSASIFANH GISNGNLSAL 240 STTDALQMEL PLIQFDPNNQ FIYSRDYATH LTNLALLNDQ SEELLNHIDV LNYVVMKKEL 300 SGGTHTSMTP SNELVVPRYE GDVPPLQDDF TPYLYLNGAN LSIFEDIKSH CGFENVANLG 360 VVADSLKLCE SESMRRTNSK TKTRTTLA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | D88621 | 0.0 | D88621.1 Oryza sativa mRNA for OSMYB5, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881555.1 | 1e-158 | transcription factor GAMYB | ||||
TrEMBL | A0A0E0MTD2 | 0.0 | A0A0E0MTD2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G08780.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15408 | 10 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 5e-21 | myb domain protein 101 |