![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI01G05760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 306aa MW: 32726.8 Da PI: 10.7782 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.5 | 8.5e-11 | 203 | 224 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk++++pr ORUFI01G05760.1 203 LDDGYKWRKYGQKVVKNTQHPR 224 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-12 | 188 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.23E-9 | 195 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.873 | 198 | 241 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.3E-5 | 203 | 239 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-7 | 204 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MFPSPGRAVM ALGHHGAARQ PPTTMAAAAS SSTTSAAAAP ATATTTVAFS FQHPTPTPSH 60 HHHHHGVLGY SPLVLDHHHP TTAAASSHAP SPPTLHHHHG GGLHAAAPPP RSSPPHPWSC 120 EEGDHRGRPQ MGNKGEAAAA MGAMGINDAG NNTAAAAAAQ HHLGVGAVRM KKVGGGGGGG 180 GKARRKVREP RFCFKTMSDV DVLDDGYKWR KYGQKVVKNT QHPRFEMRND ATSWSFESKE 240 CTLWSPIKFL WNASFHAVAI HPRIPLTAAR STRGERGRLW AVRCGSDIPS QVHCPRNPVT 300 RKYQFE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK108755 | 0.0 | AK108755.1 Oryza sativa Japonica Group cDNA clone:002-150-F11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632233.1 | 1e-159 | probable WRKY transcription factor 13 isoform X2 | ||||
Refseq | XP_025879175.1 | 1e-159 | probable WRKY transcription factor 13 isoform X3 | ||||
TrEMBL | A0A0E0MSA1 | 0.0 | A0A0E0MSA1_ORYRU; Uncharacterized protein | ||||
STRING | OS01T0182700-01 | 1e-158 | (Oryza sativa) | ||||
STRING | ONIVA01G06080.2 | 1e-158 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39410.1 | 7e-18 | WRKY DNA-binding protein 13 |