PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G01850.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 508aa MW: 54702.5 Da PI: 8.7065

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G01850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.6	2.5e-12	452	490	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r ++++eEdell++++++lG++ W++Ia +++ gRt+ ++++ ORUFI01G01850.1 452 RRSFSKEEDELLLKLHALLGNR-WSLIAGRLP-GRTD---REHY 490 6789****************.*****.*9...5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11805	1.2E-151	45	385	IPR021763	Protein of unknown function DUF3326
SuperFamily	SSF46689	5.87E-9	446	487	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.089	447	498	IPR017930	Myb domain
SMART	SM00717	1.8E-8	451	496	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-10	452	489	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-14	454	488	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MALHLTRPFL RPSPPPPRPT RRSSRAHCLA PSASARGPSF RRPYTSVLVV PTGVGAAVGG 60 FAGDALPVAR ALGAVADCVI SHPNVLNAAM LYWPMPNTLY VEGYALDRFA EGSWALQPVH 120 QNKVGLVLDS GIEEELRLRH LQVADAARAS LGLPVVEYIV TDTPLEIKTW FDPKCGKSTG 180 SVGNSDSLLR AVEALVNRSD VNAVAVVARF PDDDPEDSDC YREGKGVDLL AGVEAIISHL 240 IVKKFKIPAA HAPAVLPPVL SLSVSPRSAA EEIGHTFLPC VLAGLSNAPQ YVMRRNGNMD 300 NGCIVASDVD SVILPKDACG GDGTIAFART ATKNKPLIIT VQENETVLDD TPDKFNIEAL 360 NVQNYWEAIG VIAAHKAGIN PNALRRQGID HLKSSLRLYP AQNRGSRKSA CSPPQEKLYT 420 HELVSSQPPP RLISEHLPAG DPPSPLSRSR KRRSFSKEED ELLLKLHALL GNRWSLIAGR 480 LPGRTDREHY ITVATSPSTA SPSAKRSS

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MALHLTRPFL RPSPPPPRPT RRSSRAHCLA PSASARGPSF RRPYTSVLVV PTGVGAAVGG  60
FAGDALPVAR ALGAVADCVI SHPNVLNAAM LYWPMPNTLY VEGYALDRFA EGSWALQPVH  120
QNKVGLVLDS GIEEELRLRH LQVADAARAS LGLPVVEYIV TDTPLEIKTW FDPKCGKSTG  180
SVGNSDSLLR AVEALVNRSD VNAVAVVARF PDDDPEDSDC YREGKGVDLL AGVEAIISHL  240
IVKKFKIPAA HAPAVLPPVL SLSVSPRSAA EEIGHTFLPC VLAGLSNAPQ YVMRRNGNMD  300
NGCIVASDVD SVILPKDACG GDGTIAFART ATKNKPLIIT VQENETVLDD TPDKFNIEAL  360
NVQNYWEAIG VIAAHKAGIN PNALRRQGID HLKSSLRLYP AQNRGSRKSA CSPPQEKLYT  420
HELVSSQPPP RLISEHLPAG DPPSPLSRSR KRRSFSKEED ELLLKLHALL GNRWSLIAGR  480
LPGRTDREHY ITVATSPSTA SPSAKRSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	448	453	SRKRRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878284.1	0.0	uncharacterized protein LOC4325987
Swissprot	P08452	1e-114	Y1174_SYNP6; Uncharacterized lipoprotein syc1174_c
TrEMBL	A0A0E0MQV5	0.0	A0A0E0MQV5_ORYRU; Uncharacterized protein
STRING	ORUFI01G01850.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10772	8	8