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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA12G0180300.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
NAC |
Protein Properties |
Length: 294aa MW: 31190.8 Da PI: 6.5128 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA12G0180300.1 | genome | AGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 133 | 2.1e-41 | 18 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L + + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+
ORGLA12G0180300.1 18 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVVDVYGYHPSQLAAvageASARDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSP 109
69***************************99***************84455333335569*******************************9 PP
NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++
ORGLA12G0180300.1 110 SCVISSaTNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 149
99998868889***************************85 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MATTRSGGGG AISDPFATPG FRFYPTEEEL LGFYLRHRLA GTRPDVERVI PVVDVYGYHP 60 SQLAAVAGEA SARDTEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS CVISSATNRV 120 IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV ADDADAAAAA MLHPMAPPRL RNELGVCRVY 180 ISTGTLRSFD RRPLDNQAAA PTQQQVMPSL TAAAAVNTNL CGGGGGVVFA GAQGDSSRDC 240 SSSSGSRELA GGADGSEDDA IDWNSLISSA TADDLGFNTV VGFDPSIVGS WPQV
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-28 | 19 | 180 | 19 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-28 | 19 | 180 | 19 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-28 | 19 | 180 | 19 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-28 | 19 | 180 | 19 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-28 | 19 | 180 | 22 | 166 | NAC domain-containing protein 19 |
3swm_B | 2e-28 | 19 | 180 | 22 | 166 | NAC domain-containing protein 19 |
3swm_C | 2e-28 | 19 | 180 | 22 | 166 | NAC domain-containing protein 19 |
3swm_D | 2e-28 | 19 | 180 | 22 | 166 | NAC domain-containing protein 19 |
3swp_A | 2e-28 | 19 | 180 | 22 | 166 | NAC domain-containing protein 19 |
3swp_B | 2e-28 | 19 | 180 | 22 | 166 | NAC domain-containing protein 19 |
3swp_C | 2e-28 | 19 | 180 | 22 | 166 | NAC domain-containing protein 19 |
3swp_D | 2e-28 | 19 | 180 | 22 | 166 | NAC domain-containing protein 19 |
4dul_A | 2e-28 | 19 | 180 | 19 | 163 | NAC domain-containing protein 19 |
4dul_B | 2e-28 | 19 | 180 | 19 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK109939 | 0.0 | AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence. |