PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0170500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 333aa    MW: 34759.1 Da    PI: 7.5489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0170500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.5e-15171217455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+k+Lq
  ORGLA12G0170500.1 171 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVKELQ 217
                        5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.993167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-18171229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-19171226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-13172217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-16172221No hitNo description
SMARTSM003534.2E-17173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDDSSFFMQW AMDTLHQLPS DSTAAAYATD VAGDAFPSLQ ALRNASAAGG GGGGGGFRDL  60
TVQVDQVHRA NSWSSSDSPG GAAATAAAGW SPHVTGGGGG GGGRGHRPMS WNFSAASAQP  120
TTEDSGGGGG GGVVPAPPQA METETATARA APVKKGGGGS SSAPAPGYVQ DHIIAERRRR  180
EKINQRFIEL STVIPGLKKM DKATILGDAV KYVKELQEKV KTLEEEDGGR AAAMVVRKSS  240
CSGRQCDGEG RGSRVPEMEV RVWERSVLVR VQCGNARGLL VRLLSEVEEL RLAITHTSVM  300
PFPASTVIIT ITAKLLAPES GLQLIYIDRW ISC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-15171226863Transcription factor MYC2
5gnj_B3e-15171226863Transcription factor MYC2
5gnj_E3e-15171226863Transcription factor MYC2
5gnj_F3e-15171226863Transcription factor MYC2
5gnj_G3e-15171226863Transcription factor MYC2
5gnj_I3e-15171226863Transcription factor MYC2
5gnj_M3e-15171226863Transcription factor MYC2
5gnj_N3e-15171226863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERRRRE
2176181RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0170500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618735.11e-156transcription factor NAI1 isoform X2
TrEMBLI1R8490.0I1R849_ORYGL; Uncharacterized protein
STRINGORGLA12G0170500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-31bHLH family protein