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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
ORGLA12G0169600.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
NAC |
| Protein Properties |
Length: 378aa MW: 41684.3 Da PI: 8.105 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA12G0169600.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 147.8 | 5.4e-46 | 37 | 194 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......................kvkaeekew.yfFskrdkkya 69
pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk +++a eke+ yfF+ r +ky+
ORGLA12G0169600.1 37 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavalqgssssssssssslsTAAAAEKECgYFFCLRGRKYR 127
69***************************.99***************7799********9999998888764444677878*********** PP
NAM 70 tgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
++ r+nr+t sg+Wkatg dk+++s+ g +glkk+Lv+y+g+a kg+ktdW+mhe+rl
ORGLA12G0169600.1 128 NSIRPNRVTGSGFWKATGIDKPIYSSslaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 194
*************************8777666655555***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 378 aa
Download sequence Send
to blast |
MEEEKRLERI IKEIDSSPIS PGGSGAALLA EDDDLVFPGF RFHPTDQELV GFYLTRKVEK 60
KPFSIDIIKE IDIYKHDPWD LPKVSHGAVA LQGSSSSSSS SSSSLSTAAA AEKECGYFFC 120
LRGRKYRNSI RPNRVTGSGF WKATGIDKPI YSSSLAAAAA GAGDCIGLKK SLVYYRGSAG 180
KGTKTDWMMH EFRLPSSISD SDHLQDASET WTICRIFKRS MTYTKGRAAA AASMNKRISH 240
QLQHIHHHQQ QFYYHEVVHD HGHHHRRHLQ QYAGRASMAA AAANIVDVID HSSDAETTTR 300
SHSHSQSHLV ADIRHRQSPF MLDFHAGTAV SSSSTAAAGW SEVMSFSRDG GSSSGSSWDE 360
LGRIMDISTN SANNNYYL
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-43 | 38 | 219 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-43 | 38 | 219 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-43 | 38 | 219 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-43 | 38 | 219 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 7e-43 | 38 | 219 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 7e-43 | 38 | 219 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 7e-43 | 38 | 219 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 7e-43 | 38 | 219 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 7e-43 | 38 | 219 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 7e-43 | 38 | 219 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 7e-43 | 38 | 219 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 7e-43 | 38 | 219 | 22 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 6e-43 | 38 | 219 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 6e-43 | 38 | 219 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
| Publications
? help Back to Top |
- Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
Plant Signal Behav, 2016. 11(6): p. e1181245
[PMID:27159137] - Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
Nat Plants, 2016. 2: p. 16013
[PMID:27249348] - Shahnejat-Bushehri S, et al.
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
Front Plant Sci, 2017. 8: p. 214
[PMID:28326087] - Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
Plant J., 2017. 92(6): p. 1106-1120
[PMID:29032592] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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