PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA12G0155000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CPP | ||||||||
Protein Properties | Length: 407aa MW: 44415.4 Da PI: 6.4931 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.8 | 5.2e-14 | 100 | 137 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YC Cfa+g++Cse+C C+ C Nk+ ORGLA12G0155000.1 100 CKSCSCKKSKCLKLYCVCFASGSHCSESCGCDPCYNKS 137 89**********************************97 PP | |||||||
2 | TCR | 46.3 | 8.4e-15 | 176 | 211 | 4 | 39 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dCkN ORGLA12G0155000.1 176 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNP 211 79*********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 3.66E-5 | 40 | 50 | No hit | No description |
SMART | SM01114 | 4.5E-9 | 98 | 139 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 28.854 | 99 | 213 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.5E-10 | 101 | 136 | IPR005172 | CRC domain |
SMART | SM01114 | 7.8E-13 | 173 | 214 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.7E-11 | 176 | 210 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MSAAEDPAKP PPPPPPQLEA SGSDPDDPLL RDRVVVVAPP PPPPPPPPPP APAPALLAPA 60 ENASAEAAFA VPPAAIAAVV EANGNSEKKK KRKTDEGEGC KSCSCKKSKC LKLYCVCFAS 120 GSHCSESCGC DPCYNKSIHG VPRSTPALPL KAVQTLETGQ DSVEQLIRSP MDFGRRKCTC 180 KKSGCLKKYC DCYQGGAGCS INCKCDDCKN PYGRKVGVIL DGKNILAGPT PNERNGTEAD 240 SSDDEEDDYY MNRPLSPVSP SPVSRESSFQ QETLVGVEVQ TMNGHLYPKP LTQVRPESWQ 300 LTRRPTEEVR GEAWHYLRRP SEDGTSDVME GHADPKFQRD NKQLENHVDR YSIPRCIEVM 360 NAMADLSPIE KSLAPDVFLD PSNREIFLSL TVDIRTMWLK RKMKSLV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 92 | KKKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA12G0155000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU406718 | 0.0 | CU406718.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103K09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618281.1 | 0.0 | protein lin-54 | ||||
TrEMBL | I1R7P4 | 0.0 | I1R7P4_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q2QMG8 | 0.0 | Q2QMG8_ORYSJ; Os12g0605300 protein | ||||
STRING | OS12T0605300-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA12G0155000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9610 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-25 | TESMIN/TSO1-like CXC 2 |