PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0153000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 361aa    MW: 38249.4 Da    PI: 10.2433
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0153000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.2e-27293346355
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYe++
  ORGLA12G0153000.1 293 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEEN 346
                        9*************************988**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-18244289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-29279346IPR003657WRKY domain
PROSITE profilePS5081126.36286352IPR003657WRKY domain
SuperFamilySSF1182903.66E-23289345IPR003657WRKY domain
SMARTSM007741.8E-30291351IPR003657WRKY domain
PfamPF031066.6E-23293345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIAAETG EACAKFRKVV SLLGNGGGGG  60
GGGHARGRMA GRSRPSAVLR EKGFLESSSG GGQLGMMMSG AATPSTSSAA HLRNRIGGGG  120
GVPPDSLRGL DLVSSSSKGG AHQFDPPKLV QPLSVQFQFG ATAHRYPFQQ HQHQQKLQAE  180
MFKRSNSGIS LKFDSPSATG TMSSAFMSSL SMDGSVASLE GKPPFHLISG PVASDPVNAH  240
HAPKRRCTGR GEDGSGKCAT TGRCHCSKRR KLRIKRSIKV PAISNKIADI PPDEYSWRKY  300
GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RCVDDPAMLI VTYEENAEAP SFCSGTVGPV  360
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-17284344766WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0153000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706480.0AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620342.10.0protein WRKY1
SwissprotQ32SG42e-85WRKY1_MAIZE; Protein WRKY1
TrEMBLI1R7M40.0I1R7M4_ORYGL; Uncharacterized protein
STRINGORGLA12G0153000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-65WRKY DNA-binding protein 21