PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 298aa MW: 33797.3 Da PI: 5.1983

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA12G0140200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	55	102	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ lv++++ +G g+W++ ar g++Rt+k+c++rw++yl ORGLA12G0140200.1 55 RGPWTVDEDLTLVNYIADHGEGRWNSLARAAGLKRTGKSCRLRWLNYL 102 89********************************************97 PP
2	Myb_DNA-binding	55.6	1.2e-17	108	151	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ ORGLA12G0140200.1 108 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 151 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.448	50	102	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-30	53	149	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-14	54	104	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-16	55	102	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-22	56	109	IPR009057	Homeodomain-like
CDD	cd00167	6.86E-11	57	102	No hit	No description
PROSITE profile	PS51294	23.86	103	157	IPR017930	Myb domain
SMART	SM00717	1.2E-15	107	155	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-16	108	151	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-24	110	156	IPR009057	Homeodomain-like
CDD	cd00167	1.18E-11	110	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MAASQRSRST AAQLDVDDQA AADQLMTMMR RPAAALQDEA AAEEEAADLQ LELRRGPWTV 60 DEDLTLVNYI ADHGEGRWNS LARAAGLKRT GKSCRLRWLN YLRPDVKRGN FTADEQLLIL 120 DLHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDANSARFK DAMRYLWMPR 180 LADASQLGDH HGYNGTTAMG DAHGMPVMTS SSSDSFATSE SYDGGLYANV QDNEMVNGGD 240 YYWMQGANQG FCSNYESEQQ LHPHEHSQFQ DPDLVGWVQG FSEGISENFW SLEDIWKM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	7e-26	49	155	21	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA12G0140200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU406184	0.0	CU406184.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108M20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618854.1	0.0	transcription factor JAMYB-like
Swissprot	Q2QZJ8	1e-109	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	I1R796	0.0	I1R796_ORYGL; Uncharacterized protein
STRING	ORGLA12G0140200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	7e-75	myb domain protein 112

Publications ? help Back to Top
Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]