PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0114800.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 301aa    MW: 31983.1 Da    PI: 9.8825
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0114800.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.7e-07165209755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++ r RR+ri s+ +eL +l+P a    ++ +s ae+L+ A ++++ Lq
  ORGLA12G0114800.1 165 AAARERRRRISSKTAELSRLIPGA----ARMNSTAEMLQAAARHVRLLQ 209
                        567899999**************8....577***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.982158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-8160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-7161217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-6164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-5165209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSTATTRLGV RRPTPAPVFD FDRLLLGSSS GGGMVGDDVV ADALLGFAYD PPAHGAAALD  60
DVLAPLPGAD KTPRERGVVA DGRSFRRAGA ALPAPPTELV TRFVPTPPPL PPVQQQQQQR  120
WELPDAVFVR GAGAAEAKKG GAAASHDDHD DGRHHHHHNQ AVQSAAARER RRRISSKTAE  180
LSRLIPGAAR MNSTAEMLQA AARHVRLLQA QVGMLALIHS SGEAKAASSM AASREHHQMM  240
MMRALLASGG VQERLAGEGR CLVPTSLVRA IADDDAMATS NPALSRDVNR FKDSLDQQQQ  300
Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0114800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI1R6J20.0I1R6J2_ORYGL; Uncharacterized protein
STRINGORGLA12G0114800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.17e-21bHLH family protein