PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0021500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 977aa    MW: 108876 Da    PI: 7.0754
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0021500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS39.21e-12201282112
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilk 92 
                        v lL ecA +v++g++e+a+   ++++ l   ++ p+q l + ++  L +rl++s ++ly al  ps+    + s+  aa++ f+++ P+l 
  ORGLA12G0021500.1  20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQHLSKIIVDSLDHRLLSSIQGLYGALiDPSDYF--EKSTLRAARHNFFKLNPYLS 108
                        6789**********************9876.5667*************************9985444444..35555567788********* PP

               GRAS  93 fshltaNqaIleavegeerv 112
                         +++t N+aI+ea+e e+ +
  ORGLA12G0021500.1 109 TGFVTINRAIMEAMEDEKNI 128
                        ***************99865 PP
2GRAS213.89e-66168478109374
               GRAS 109 eervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                         + vHi+D++ s  ++ QW+ Ll+ +  Rp+g+p+l +T++++    +++ l e+++ L+k Ae+l+v+f+f   v  rle+l++++Lr   
  ORGLA12G0021500.1 168 LQVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLAEMQSLLSKKAESLEVSFRFIS-VIGRLETLDFSNLRSTF 254
                        4789*****8653389***************************....9**************************.799**********5444 PP

               GRAS 199 ....gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqe 245
                            g a+a++++lq+hrll                                           s  +++   ++L++++ l+P+++v++eq+
  ORGLA12G0021500.1 255 qikfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIRALKPNIMVIMEQD 346
                        4555*******************************************************98666777778899******************* PP

               GRAS 246 adhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                        adhn+  F +rf e l+yy+alfd+++a ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a 
  ORGLA12G0021500.1 347 ADHNALLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAI 438
                        **************************77654444456******************************************************* PP

               GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         + k  l  ++ +  + +e++g+l+l W + +L+s+S+Wr
  ORGLA12G0021500.1 439 REGKENLLSFGLKNCQNKEDRGCLLLSWGSTNLYSISVWR 478
                        ***********888*************************8 PP
3GRAS3542.3e-1085299662374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        + lL++cA  vs+g++ +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++  ++l++al +s++s +++     a++  ++v P+lk
  ORGLA12G0021500.1 529 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADTHLVP-VARRHMFDVLPFLK 619
                        679*******************************9*****************************8888875554444.6778889******* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        +++lt+N+aIlea+ege+ vH +Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn+ v
  ORGLA12G0021500.1 620 LAYLTTNHAILEAMEGERFVHLVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-V 706
                        *************************966899****************************....9**************************.7 PP

               GRAS 183 akrledleleeL....rvkpgEalaVnlvlqlhrll........................................................ 214
                        + +l+++++++L     v++gEalaV++vlqlhrll                                                        
  ORGLA12G0021500.1 707 EAKLDEMDFDALrhdlGVRSGEALAVSVVLQLHRLLavddgrrhaaagcltpvqiiarssprsfgellerelntrlqlspdasvvsslsphs 798
                        999**999998843335667************************************************************************ PP

               GRAS 215 ......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                              +++++++ +  ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvac
  ORGLA12G0021500.1 799 paaataAHPMTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVAC 889
                        ****98666666667999*********************************************999.68889******************** PP

               GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374
                        egaer+erhe++++W +r+e+aG+++v ls++ a++a+ ll+ +++ g y+v ++   + ++++W++rpL++v+aWr
  ORGLA12G0021500.1 890 EGAERTERHERARQWAARMEAAGMESVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 966
                        *********************************************8888****884345678**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.3361458IPR005202Transcription factor GRAS
PfamPF035143.6E-1020128IPR005202Transcription factor GRAS
PfamPF035143.1E-63168478IPR005202Transcription factor GRAS
PROSITE profilePS5098550.342502943IPR005202Transcription factor GRAS
PfamPF035148.0E-106529966IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQHLSK  60
IIVDSLDHRL LSSIQGLYGA LIDPSDYFEK STLRAARHNF FKLNPYLSTG FVTINRAIME  120
AMEDEKNILE IKVKSNLCSI LKLSHYNFKT LQGAIYVERS LMFNMVELQV VHIVDLSCSA  180
AHPWQWLKLL DDFHGRPGGA PELYLTVLHD DNDFLAEMQS LLSKKAESLE VSFRFISVIG  240
RLETLDFSNL RSTFQIKFGV AVAISCALQM HRLLLVDDNL SSTSIAQLQK MANFTQPKQM  300
ASSVCSPAST LNYLQTPSPR TPKLLARLLS AIRALKPNIM VIMEQDADHN ALLFRDRFNE  360
VLNYYAALFD CFHAVAAANP GRTDERLRVE RMILREEIKN ILVCEGVHRH ERHERLDQWA  420
MHMEESGFHN VQLSFSAIRE GKENLLSFGL KNCQNKEDRG CLLLSWGSTN LYSISVWRLC  480
CTDRGMFQDD MLSSATSSPA SSVYSPSPSP SNGSWVQELS HDQQSVRLIG LLYQCAAEVS  540
AGSFDRANLC LEHITQLASL DAPHALQRLA AVFADALARK LLNLIPGLSR ALLSSANSAD  600
THLVPVARRH MFDVLPFLKL AYLTTNHAIL EAMEGERFVH LVDFSGPAAN PVQWIALFHA  660
FRGRREGPPH LRITAVHDSK EFLANMAAVL SKEAEAFDIA FQFNAVEAKL DEMDFDALRH  720
DLGVRSGEAL AVSVVLQLHR LLAVDDGRRH AAAGCLTPVQ IIARSSPRSF GELLERELNT  780
RLQLSPDASV VSSLSPHSPA AATAAHPMTS TPKLGSFLSA VRSLSPKIMV MTEQEANHNG  840
GAFQERFDEA LNYYASLFDC LQRSAAAAAE RARVERVLLG EEIRGVVACE GAERTERHER  900
ARQWAARMEA AGMESVGLSY SGAMEARKLL QSCGWAGPYE VRHDAGGHGF FFCWHKRPLY  960
AVTAWRPAAS RRGHTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-3055896632375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0021500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619625.10.0scarecrow-like protein 3
TrEMBLI1R3V90.0I1R3V9_ORYGL; Uncharacterized protein
STRINGORGLA12G0021500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-99scarecrow-like 3