PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0020400.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 585aa    MW: 63939.2 Da    PI: 4.9695
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0020400.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.92e-1001675461373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l+elL++cA+av+sg+ + a +lL++++ ++sp+gd+++Rla+yf+ +L+arla+   +l + l +s++++ +  e l a+++f  ++ +  
  ORGLA12G0020400.1 167 LRELLMSCAQAVASGNRRSAGELLEQIKRHSSPTGDATERLAHYFADGLEARLAG-AASLEHRLLASAEERASAMELLEAYQVFMAACCFKW 257
                        689***************************************************9.88999999999999999******************* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                        +++  aN aIl+a+eg ++vHi+D++ + +GlQWp+Llq La+R++gpp++R+T vg+p++g   +++le+tg+rL++ A+++g+pf+f+++
  ORGLA12G0020400.1 258 VAFTFANMAILRAAEGRSKVHIVDYGGQyHGLQWPSLLQRLAEREGGPPEVRMTLVGHPQPGfrPARRLERTGRRLSNCARAFGLPFKFRAV 349
                        *************************86538*************************************************************9 PP

               GRAS 182 vakrledleleeL.rvkpgE.alaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                        +a r+e+++ e+   v+p+E a++Vn vl+l +l+des+  ++  +rd+vL  +++++P v+v +  +  h+++ F +rf eal ++salfd
  ORGLA12G0020400.1 350 AAARWETVTSEDVvGVDPDEaAVVVNDVLSLGTLMDESGVFDDpsPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFD 441
                        999*****99987589997736999*************98877779********************************************** PP

               GRAS 270 sleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                        +l+a+ p+e  + r+++Er +l+r++v v+a egaer+er et+++W++r ++aG+++v+++ ++++ +++ +r+ + +++ +ee+ g+l++
  ORGLA12G0020400.1 442 MLDATTPEEGsHLRVVLERDVLRRAAVGVIAGEGAERVERPETYRRWQARNRRAGLRQVAVEADVVEAVRRRVRRRHHEEFVIEEDAGWLLQ 533
                        **99988876599****************************************************************999************ PP

               GRAS 361 gWkdrpLvsvSaW 373
                        gWk+r L++ SaW
  ORGLA12G0020400.1 534 GWKGRILYAHSAW 546
                        ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.736141527IPR005202Transcription factor GRAS
PfamPF035146.9E-98167546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MGPAAPPSEA AAAADDVVLP YISRILMEED IDDDMFFCLY PDHPALLEAQ QPFAQILSSS  60
SGIAGEVNSA PMEDSAALMM QGSGNGRGRK GSKHGGDELE AEVGRASKLM ATPEEEEDDD  120
DGVGEMLEKM MLNGDEEVNA PRVPAEKNGG KAARRKRRQG KGEVVDLREL LMSCAQAVAS  180
GNRRSAGELL EQIKRHSSPT GDATERLAHY FADGLEARLA GAASLEHRLL ASAEERASAM  240
ELLEAYQVFM AACCFKWVAF TFANMAILRA AEGRSKVHIV DYGGQYHGLQ WPSLLQRLAE  300
REGGPPEVRM TLVGHPQPGF RPARRLERTG RRLSNCARAF GLPFKFRAVA AARWETVTSE  360
DVVGVDPDEA AVVVNDVLSL GTLMDESGVF DDPSPRDTVL GSIRDMRPAV FVQAVVNGAH  420
GAPFFPTRFR EALFFFSALF DMLDATTPEE GSHLRVVLER DVLRRAAVGV IAGEGAERVE  480
RPETYRRWQA RNRRAGLRQV AVEADVVEAV RRRVRRRHHE EFVIEEDAGW LLQGWKGRIL  540
YAHSAWVVAE DATSVGELTV VTTSLVAIIL SAASAQDELP LSTNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3717454725378Protein SCARECROW
5b3h_D2e-3717454725378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0020400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619736.10.0scarecrow-like protein 30
TrEMBLI1R3U80.0I1R3U8_ORYGL; Uncharacterized protein
STRINGORGLA12G0020400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160181014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-91SCARECROW-like 14