PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA12G0007100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 336aa    MW: 37453.6 Da    PI: 5.7689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA12G0007100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.11.7e-23139200259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                        +Dgy+WrKYG K+++g++f+rsY+rCt++   gC ++k+++++ ++dp ++++tY++eH+++
  ORGLA12G0007100.1 139 EDGYQWRKYGEKKIQGTHFTRSYFRCTYRddrGCLATKQIQQEdKNDPPMFQVTYSNEHTCT 200
                        8***************************99999*******9862579*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.03E-21131200IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-23132200IPR003657WRKY domain
SMARTSM007748.2E-34138201IPR003657WRKY domain
PfamPF031066.9E-25139199IPR003657WRKY domain
PROSITE profilePS5081117.523139202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAVTESVCLS DEQQAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HAMRALNVAL  60
SVMNQPHASS SSAAAAAAGH HFPVMTMIKA ESTPANSPAA DVSDNHVAGK ARRSSPAKRR  120
RINCEDKSSW VYHTVVPHED GYQWRKYGEK KIQGTHFTRS YFRCTYRDDR GCLATKQIQQ  180
EDKNDPPMFQ VTYSNEHTCT TTRLINNTNN NPAALHSLTA NPNGHPDDDS DDTILTKMIK  240
QEQQAAWLPS PPPDLTTISN NFDETPGLHV SQEVPPCSSN SSAISHYADE FDHHQMGQQL  300
ETTVMEEALG LGADLDDPYF YDPNLLLIYE NLMNCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13139199968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA12G0007100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX8422440.0BX842244.3 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619940.10.0probable WRKY transcription factor 69 isoform X1
TrEMBLI1R3G50.0I1R3G5_ORYGL; Uncharacterized protein
STRINGORGLA12G0007100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.25e-18WRKY family protein