PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0169400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 178aa MW: 20161.8 Da PI: 9.1116 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 103 | 143 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +rRR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq ORGLA11G0169400.1 103 KRRRERINERLRILQQLVPNG-----TKVDISTMLEEAVQYVKFLQ 143 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.4E-14 | 93 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.212 | 93 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-14 | 95 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-11 | 99 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.22E-11 | 102 | 147 | No hit | No description |
Pfam | PF00010 | 1.1E-8 | 103 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
WMMRDLAHQV ITGNKRMFPM DEHFEQQQKK PKKKTRTSRS VSSSSTITDY ETSSELVNPS 60 CSSGSSIGED SIAATDGSVV LKQSGNSRGH KQCSKDTQSL YAKRRRERIN ERLRILQQLV 120 PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDTWMFAPL AYNGMNMDLG HTLAENQE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0169400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 5e-99 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697725.1 | 2e-81 | PREDICTED: transcription factor bHLH139-like | ||||
Swissprot | Q84WK0 | 4e-44 | BH085_ARATH; Transcription factor bHLH85 | ||||
TrEMBL | I1R1Q2 | 1e-131 | I1R1Q2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0169400.1 | 1e-132 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14002 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 4e-33 | root hair defective 6-like 4 |
Publications ? help Back to Top | |||
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