PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0103900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 503aa    MW: 51900.7 Da    PI: 7.8603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0103900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000493233761155
                        HHHHHHHHHHHHHHCTSCCC...........TTS-.STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkas........kapskK.lsKaeiLekAveYIksLq 55 
                         RR++i +++  L++l+P +         +  +     Ka +L + ++Y++sLq
  ORGLA11G0103900.1 323 VRREKISERMKLLQDLVPGCNkvakfsqkNKFKFHvTGKAVMLDEIINYVQSLQ 376
                        6******************77798887552222234679999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.601312375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-9322393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-10322392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.37E-7324380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAHDGFLGGG GGSFHALAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVHEAALMD  60
ELASRLGGVC GGGLGGGGVP SPPSSSRYAS CYSTPVGSPC KPAPAPPVPS LLAAADAMIA  120
ERAARMSCLA AAGHGGGKLS RAASSQSLLA EPAAAGGVHQ LPASDGSSSD APSRKRKAPG  180
SKARGKDAAT SIAKVLPLLS ASPLQSQRRT SPETMVNFPQ SPEPGTKAKK CKLSADAAGD  240
EDTKPVAGDA GHGGNGKGKV LDAAGEPPKD YIHVRARRGQ ATDSHSLAER VNAAGVYAAI  300
HNFVFSSILA FADAIAAVFH LQVRREKISE RMKLLQDLVP GCNKVAKFSQ KNKFKFHVTG  360
KAVMLDEIIN YVQSLQRQVE FLSMKLSTVN PQLDFDVDNF IPKDQANDPS MPAPLSLPPP  420
PPPLSYSPEG ASPGICYASS QGTAMQSVVT STKHLETAPT FANHHVIPVP SLDGFHSAHS  480
QAGSCMWEDD LQSVVQMGFR GNT
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0103900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615632.10.0transcription factor BHLH089-like isoform X1
TrEMBLI1QZU70.0I1QZU7_ORYGL; Uncharacterized protein
STRINGORGLA11G0103900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-43bHLH family protein