PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ORGLA11G0090200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 1190aa MW: 134403 Da PI: 7.7795

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA11G0090200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.2	4.2e-11	734	799	1	74
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 +fY++YA ++GF+++ks+++k r+ +C++egk+ ++ ++ +++ +r+++++gCka +k++ ++dg ORGLA11G0090200.1 734 NFYQRYACHAGFDIKKSRMHKA-------FREVCCTREGKHVSKVNN-GDRQWRRPSKKMGCKAYVKLRHNYDG 799 6**************99998.......7899******9999.88999*************999844 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54001	1.71E-15	530	702	No hit	No description
Pfam	PF02902	6.3E-5	598	697	IPR003653	Ulp1 protease family, C-terminal catalytic domain
Pfam	PF03101	1.2E-6	734	798	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.223	1003	1039	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1190 aa Download sequence Send to blast
RRWGGWGGVG GAHNPSETKG PNLTRCSAAL VVQACRALST VHHEKLEEIG LDAVAYKSLE 60 SLEQPDLIQW LMDRTDPDTM CISIDDDRKI PITSRTVRLV LGTLLGGNDI VLPSHKVVRT 120 VHKSITDELG IHKKARLSTK QLIEVIKSQK DDSRAIXYFI MVLMSKLLVP TTDFYVPKGD 180 VWVASDLDRV TAIDWSKAVF RAVNDSIRYW RQNPASSIAS FVVFLVVLYL DNILPPRDIG 240 LDLTFTPRIQ IFTKDIVDKL VAADQEASGD GTPPFGNLPR LVLLESLAEY DRQAKESALE 300 IERQFRLVVD KQHMLCQSVI DVLQANRAAQ PPPVVPQAAQ CQEASRRQSD VQFTSAEINP 360 NDSEDQQQQQ HHGCNGSPSV FDQHTIHPNA PTHVSPSMEI VPYIPPVRLE VADQPHLGSA 420 HSPDLTQRSP IPTDSAPLTS EEVSAQYSAP DTAEEPLAIE VGGVIGNVPG VSTAIQTEDA 480 PRAVDQESHG TEPKRFIQKP ARFVSPVVVG PSIMPSDVSL SVQLRDFLLT NGGCMDIVKL 540 LDIDSSVAYG NDELKSFSNG NLTEWLFIDA FSSILFKDDM RNMPDTFGKR IFFPTSVSII 600 VPVLHHNHWS LYAINIAHGR VDIMDSNNYN LIGTLESDHH CALSKRIVKR LSNALHEVAP 660 KSFCRFGGFR KNMMKCPKVQ ICSNDCVFYI MRFMEAYDGN RESIETFSIP GPSVPPHMVP 720 TEGMAFPTYD DAYNFYQRYA CHAGFDIKKS RMHKAFREVC CTREGKHVSK VNNGDRQWRR 780 PSKKMGCKAY VKLRHNYDGG ALSSVVWHIL NRHSDPLNTI FARDAQIEPD MMLCINQTYT 840 PYEFETSWDQ FIKRYDLEGC PTMKALYDIR DKWVPAFSRK EYCERMTSTQ RSESMNKLVK 900 HKFVDHQTTL HRFARRILEV ITDRKEKEAA ETRAWSGKPV LAVRWPFVIQ MSRLYTRAAF 960 RLFEDALXDS TDFRITQDDN FRNGWLVSHT KLSEKHNWCX KQFKLIADVD AGVFTCECKQ 1020 WEHTGMFCTH MLWAFVHVQL EKIPAAYILK RSRTKGRTRD PDEEVQLGAK GKKMCTRECG 1080 WCHLRDGHYA NTCLMNPTNF NKVMKAANRG KGKRGRPRGS GRGRGRGTNA GCKVSTVVPR 1140 TTRRSTREGP SLRRCLDNEW AEDAAESARY TDDDQTNADD DIGSYESDSA

Sequence ? help Back to Top

Protein Sequence Length: 1190 aa Download sequence Send to blast

RRWGGWGGVG GAHNPSETKG PNLTRCSAAL VVQACRALST VHHEKLEEIG LDAVAYKSLE  60
SLEQPDLIQW LMDRTDPDTM CISIDDDRKI PITSRTVRLV LGTLLGGNDI VLPSHKVVRT  120
VHKSITDELG IHKKARLSTK QLIEVIKSQK DDSRAIXYFI MVLMSKLLVP TTDFYVPKGD  180
VWVASDLDRV TAIDWSKAVF RAVNDSIRYW RQNPASSIAS FVVFLVVLYL DNILPPRDIG  240
LDLTFTPRIQ IFTKDIVDKL VAADQEASGD GTPPFGNLPR LVLLESLAEY DRQAKESALE  300
IERQFRLVVD KQHMLCQSVI DVLQANRAAQ PPPVVPQAAQ CQEASRRQSD VQFTSAEINP  360
NDSEDQQQQQ HHGCNGSPSV FDQHTIHPNA PTHVSPSMEI VPYIPPVRLE VADQPHLGSA  420
HSPDLTQRSP IPTDSAPLTS EEVSAQYSAP DTAEEPLAIE VGGVIGNVPG VSTAIQTEDA  480
PRAVDQESHG TEPKRFIQKP ARFVSPVVVG PSIMPSDVSL SVQLRDFLLT NGGCMDIVKL  540
LDIDSSVAYG NDELKSFSNG NLTEWLFIDA FSSILFKDDM RNMPDTFGKR IFFPTSVSII  600
VPVLHHNHWS LYAINIAHGR VDIMDSNNYN LIGTLESDHH CALSKRIVKR LSNALHEVAP  660
KSFCRFGGFR KNMMKCPKVQ ICSNDCVFYI MRFMEAYDGN RESIETFSIP GPSVPPHMVP  720
TEGMAFPTYD DAYNFYQRYA CHAGFDIKKS RMHKAFREVC CTREGKHVSK VNNGDRQWRR  780
PSKKMGCKAY VKLRHNYDGG ALSSVVWHIL NRHSDPLNTI FARDAQIEPD MMLCINQTYT  840
PYEFETSWDQ FIKRYDLEGC PTMKALYDIR DKWVPAFSRK EYCERMTSTQ RSESMNKLVK  900
HKFVDHQTTL HRFARRILEV ITDRKEKEAA ETRAWSGKPV LAVRWPFVIQ MSRLYTRAAF  960
RLFEDALXDS TDFRITQDDN FRNGWLVSHT KLSEKHNWCX KQFKLIADVD AGVFTCECKQ  1020
WEHTGMFCTH MLWAFVHVQL EKIPAAYILK RSRTKGRTRD PDEEVQLGAK GKKMCTRECG  1080
WCHLRDGHYA NTCLMNPTNF NKVMKAANRG KGKRGRPRGS GRGRGRGTNA GCKVSTVVPR  1140
TTRRSTREGP SLRRCLDNEW AEDAAESARY TDDDQTNADD DIGSYESDSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1117	1126	RGSGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA11G0090200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136501	0.0	AC136501.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0044M15, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	I1QZG0	0.0	I1QZG0_ORYGL; Uncharacterized protein
STRING	ORGLA11G0090200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1425	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-28	FAR1-related sequence 5