PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA11G0077500.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 572aa MW: 61496.9 Da PI: 5.1895

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA11G0077500.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.1	1.2e-11	374	421	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++++ f L++++P+ K++Ka+iL +++ Y+k+L+ ORGLA11G0077500.1 374 KNHVMSERRRREKLKEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 421 5899*********************66......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	5.4E-16	117	182	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.339	371	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-17	374	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.99E-14	374	425	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-16	375	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-9	375	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-14	377	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MREISGGSSS SLSSGGRFFV PEDRWWSPVV ASRWWAPDPV SRWLGTTGSG TPGLRLLPPS 60 PFLTPDPPPP STCAQVIAVV SSSPLRPSRR RLHPHALTCL QLHTMSSDPV PASPLSPMLP 120 GKSFASNEYV WLSNAQSADR KLFHRALIAK TIVCVPFIMH GVLELGTTDP VSEDPALVDR 180 ITASLWDTPP RAAFSSEAGV ADIVVFEDLD HGNAAVEATT TMVPGEPEPH AVAGGEVAEC 240 ESNAHNDLEQ ITMDDIGELY SLCEELDVLD DDSSSWVADP WSSFQLVPTA EATDVDDAVV 300 AALGAIDGSC RPSPSSFVAW KRTPDSDEVQ AVPLISGEPP QKLLKKAVAG AGAWMNNADG 360 SAATMTTDQG SSIKNHVMSE RRRREKLKEM FLILKSVVPS IHKVDKASIL AETIAYLKEL 420 EKRVEELESS SQPSPRPMET TRRCCKSTGK KVSAGARAKR KAPAPEDTDG ERRHCVSNVN 480 VTIMDNKELL LELQCQWKEL LMTRVFDAIK GVSLDVLSVQ ASTSDGLLGL KIQAKVVVSA 540 AKSSQQICSI FASPAAVEPG MITEALRKAI AS

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MREISGGSSS SLSSGGRFFV PEDRWWSPVV ASRWWAPDPV SRWLGTTGSG TPGLRLLPPS  60
PFLTPDPPPP STCAQVIAVV SSSPLRPSRR RLHPHALTCL QLHTMSSDPV PASPLSPMLP  120
GKSFASNEYV WLSNAQSADR KLFHRALIAK TIVCVPFIMH GVLELGTTDP VSEDPALVDR  180
ITASLWDTPP RAAFSSEAGV ADIVVFEDLD HGNAAVEATT TMVPGEPEPH AVAGGEVAEC  240
ESNAHNDLEQ ITMDDIGELY SLCEELDVLD DDSSSWVADP WSSFQLVPTA EATDVDDAVV  300
AALGAIDGSC RPSPSSFVAW KRTPDSDEVQ AVPLISGEPP QKLLKKAVAG AGAWMNNADG  360
SAATMTTDQG SSIKNHVMSE RRRREKLKEM FLILKSVVPS IHKVDKASIL AETIAYLKEL  420
EKRVEELESS SQPSPRPMET TRRCCKSTGK KVSAGARAKR KAPAPEDTDG ERRHCVSNVN  480
VTIMDNKELL LELQCQWKEL LMTRVFDAIK GVSLDVLSVQ ASTSDGLLGL KIQAKVVVSA  540
AKSSQQICSI FASPAAVEPG MITEALRKAI AS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	384	ERRRRE
2	380	385	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA11G0077500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC145364	0.0	AC145364.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0062D09, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616671.1	0.0	anthocyanin regulatory Lc protein
Swissprot	P13526	1e-101	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	I1QZ33	0.0	I1QZ33_ORYGL; Uncharacterized protein
STRING	ORGLA11G0077500.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-19	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]