PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0071600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 617aa    MW: 69016.5 Da    PI: 8.2353
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0071600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.31.5e-2438128290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        fY++YA ++GF+vr sks  s+ ++ i++r+fvC+++g ++++++   ++k+rr+ra+ r  C a+l+v+++ +++w v++++l H+H+la
  ORGLA11G0071600.1  38 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCVLLHSHPLA 128
                        9**************************************999988787999**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-2338128IPR004330FAR1 DNA binding domain
PfamPF105511.6E-16220311IPR018289MULE transposase domain
PROSITE profilePS5096610.744500536IPR007527Zinc finger, SWIM-type
SMARTSM005753.5E-6511538IPR006564Zinc finger, PMZ-type
PfamPF044341.2E-5512534IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MPLGAAGDED AAAVTGPSSA GEPAAGMEFA SPEEARAFYC TYAARAGFRV RSSKSFASRI  60
DDAIIMRRFV CTRQGLPSRK DTLLDASKKR RNRASARAAC PAMLQVNRRP SSRWLVSRCV  120
LLHSHPLASS SSSADAAAAD AAEPNDSSSA EQDGGAAAAA AALAPGGGVA QGLLDHFRKL  180
QLDNPAFCYA VQIDRSGCIA NFIWVDARAR SLYRRFGDAV VLDLTCRRNR RAVPFAAFTG  240
MNHHRQAIVF GCALMTDESE NSFAWLLETW LAFMGGKKPM SFTIGYSRDV EMAAMKVFGG  300
DVRHRFCRRD IFFICKQKLA SLYSEHSTLK DELKECVTEL ERIDEFESTW RMLLSKYNLF  360
GNEWLQTIYS IRHQWVPAYL KDSFFGEIIN APKLETMFKF FQRNSITTTT LRDIAFQFDK  420
AIARDYQTEL QEDFATFSSK PVMKSSHPME KQASELYTKV MFDLFQDELI ESSGFLVQNV  480
ESGDISRFEV TQSENANIRY TVLYSEPRAS VSCSCHKFEF AGVLCRHALR VLTTIGIPVL  540
PENYILKRWT RNAKNNILSQ VPANTKGSLA WRCNDLCRDG IRFAEEGATS EEIYKTAKEA  600
LQKAFAEILP QSEAHLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0071600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354590.0AC135459.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0004P24, complete sequence.
GenBankAC1380000.0AC138000.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0024M06, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615544.10.0protein FAR1-RELATED SEQUENCE 9
RefseqXP_025877014.10.0protein FAR1-RELATED SEQUENCE 9
TrEMBLI1QYX40.0I1QYX4_ORYGL; Uncharacterized protein
STRINGORGLA11G0071600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-106FAR1-related sequence 3