PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0070600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 382aa    MW: 40123.6 Da    PI: 7.3293
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0070600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.72.5e-32141195358
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                        +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  ORGLA11G0070600.1 141 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKEAD 195
                        689*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-29142194IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-30143193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.735144193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-24144195IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.96E-14289351IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-23291351IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-21302351IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVSILQLQTR TEASPASSAS AAATRIFAVR RQQQEQEGEE EEEFEFQERM DLSGAQGELP  60
IPMHASAAAS PFAGMGAHGG AGGGHVVELH RHEHVGNNGQ AMAMASPPPT NVAVAAEQEG  120
SPVAGKKRGG MAVVGGGGGV AVKYRECLKN HAAAIGGNAT DGCGEFMPSG EEGSLEALKC  180
SACGCHRNFH RKEADDLDAD SCAAALRAAA GRHHHLLGPA LPHHHHKNGG GLLVAGGDPY  240
GAAYAAAXXX XXXPPPPPHG HHHHHQIIMP LNMIHTSESD EMDVSGGGGG GGRGGGSSSS  300
SKKRFRTKFT AEQKARMLEF AERVGWRLQK LDDAMVHHFC QEIGVKRRVL KHAVGDVTVA  360
FMSDHLTSKI KGVKTEEIKK GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-173013511666ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284296SGGGGGGGRGGGS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0070600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876888.11e-158zinc-finger homeodomain protein 4
SwissprotQ53N871e-160ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLI1QYW40.0I1QYW4_ORYGL; Uncharacterized protein
STRINGORGLA11G0070600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-27homeobox protein 31