PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 329aa MW: 35594.9 Da PI: 5.4489

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA11G0050000.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.7	6.7e-51	9	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd+elv++yL++k+ g +l + vi+evd+yk++PwdLp+++ ++ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v ORGLA11G0050000.1 9 LPPGFRFHPTDDELVMYYLCRKCGGLPLAA-PVIAEVDLYKFNPWDLPERAMGGEKEWYFFSPRDRKYPNGQRPNRAAGTGYWKATGADKPV 99 79***********************999.89***********8888999********************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++v +kk Lvfy g+ pkg+kt+W+mheyrl ORGLA11G0050000.1 100 GS--PRAVAIKKALVFYAGKPPKGVKTNWIMHEYRL 133 99..678*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.67E-61	5	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.666	9	166	IPR003441	NAC domain
Pfam	PF02365	9.6E-26	10	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MECGGALQLP PGFRFHPTDD ELVMYYLCRK CGGLPLAAPV IAEVDLYKFN PWDLPERAMG 60 GEKEWYFFSP RDRKYPNGQR PNRAAGTGYW KATGADKPVG SPRAVAIKKA LVFYAGKPPK 120 GVKTNWIMHE YRLADVDRSA AARKLSKSSH NALRLDDWVL CRIYNKKGVI ERYDTVDAVE 180 DVKPATAAAA AAAKGGRIGG GAAAMKVELS DYGFYDQEPE SEMLCFDRSG SADRDSMPRL 240 HTDSSGSEHV LSPSPSPDDF PGGGDHDYAE SQPSGGCGGW PGVDWAAVGD DGFVIDSSLF 300 ELPSPAAFSR GGGDGAAFGD MFTYLQKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-77	7	172	13	174	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	200	GGRIGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269\|PubMed:20632034}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA11G0050000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269\|PubMed:20632034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028184	0.0	AB028184.1 Oryza sativa mRNA for OsNAC5 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617286.1	0.0	NAC domain-containing protein 71
Swissprot	Q53NF7	0.0	NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBL	A0A0D3HJ09	0.0	A0A0D3HJ09_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0BG51	0.0	A0A0E0BG51_9ORYZ; Uncharacterized protein
TrEMBL	I1QYA8	0.0	I1QYA8_ORYGL; Uncharacterized protein
STRING	OGLUM11G05010.1	0.0	(Oryza glumipatula)
STRING	ORGLA11G0050000.1	0.0	(Oryza glaberrima)
STRING	OBART11G05220.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11804	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	5e-92	NAC domain containing protein 32

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sperotto RA, et al. Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains. J. Plant Physiol., 2010. 167(17): p. 1500-6 [PMID:20580124] Takasaki H, et al. The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice. Mol. Genet. Genomics, 2010. 284(3): p. 173-83 [PMID:20632034] Kan CC,Chung TY,Juo YA,Hsieh MH Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots. BMC Genomics, 2015. 16(1): p. 731 [PMID:26407850]