PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORGLA11G0044900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 482aa MW: 49928.5 Da PI: 8.5678 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 156.8 | 1.3e-48 | 150 | 306 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 ag+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ a+s +s+as+sss++aa+ ORGLA11G0044900.1 150 AGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRAAP 241 789******************************************************************9999******************* PP TCP 93 saakskksqksaasalnlakesr....................akarararertrekmriknkln 137 +++ ++++q++ a++l ++++++ a + +r+r+r++++ +++++++ ORGLA11G0044900.1 242 FHHLQQQQQHDVAAMLGFHHHHHqllppppphqhpeptpqdpgAGEFMRKRYREADDLFKDTSRQ 306 ********************9999********************************999998876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.349 | 156 | 210 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.2E-37 | 156 | 265 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 482 aa Download sequence Send to blast |
MIKDLRTLES WAKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS 60 RSTSDHHAAA AAAAAAAAAQ VAHQHQHQHH PFYYAAAQGG ANTMPAPASF MGSLAIVPAA 120 AAPGGGGGQV QAAAAPVASS EKKAVVAAGA GAKRPTKDRH TKVEGRGRRI RMPALCAARV 180 FQLTRELGHK TDGETIEWLL QQAEPAIVAA TGTGTIPANF SSLAVSLRSA ASHSSSPRAA 240 PFHHLQQQQQ HDVAAMLGFH HHHHQLLPPP PPHQHPEPTP QDPGAGEFMR KRYREADDLF 300 KDTSRQDPVD GATGEAEQKA RAAAAAAAPP PTAPSAMWAV GPNTTGATAA FWMQPAWAFP 360 PGAGAAGNTV QAPLQFMSRS SFPTAMNVTM ADNNNSSNNN LGMLAALNAG GGGRSGEHQH 420 QHEGQSPAEM DHQRRANGGG GEAGGAASSQ FRMIINQFAI VRGFTSPVIY LNHENPIKVA 480 EN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | ORGLA11G0044900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC120539 | 0.0 | AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616519.1 | 1e-169 | transcription factor PCF3 | ||||
Swissprot | Q53PH2 | 0.0 | PCF3_ORYSJ; Transcription factor PCF3 | ||||
TrEMBL | I1QY57 | 0.0 | I1QY57_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0044900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4934 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58100.1 | 9e-37 | TCP family protein |