PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0044900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 482aa    MW: 49928.5 Da    PI: 8.5678
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0044900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP156.81.3e-481503062137
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                        ag+k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s+as+sss++aa+
  ORGLA11G0044900.1 150 AGAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRAAP 241
                        789******************************************************************9999******************* PP

                TCP  93 saakskksqksaasalnlakesr....................akarararertrekmriknkln 137
                        +++ ++++q++ a++l ++++++                    a + +r+r+r++++ +++++++
  ORGLA11G0044900.1 242 FHHLQQQQQHDVAAMLGFHHHHHqllppppphqhpeptpqdpgAGEFMRKRYREADDLFKDTSRQ 306
                        ********************9999********************************999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.349156210IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-37156265IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MIKDLRTLES WAKEKPEIEQ PALQAVVGGG GLRAAAAAAE GGMEQQAAPS SSTSTSTNSS  60
RSTSDHHAAA AAAAAAAAAQ VAHQHQHQHH PFYYAAAQGG ANTMPAPASF MGSLAIVPAA  120
AAPGGGGGQV QAAAAPVASS EKKAVVAAGA GAKRPTKDRH TKVEGRGRRI RMPALCAARV  180
FQLTRELGHK TDGETIEWLL QQAEPAIVAA TGTGTIPANF SSLAVSLRSA ASHSSSPRAA  240
PFHHLQQQQQ HDVAAMLGFH HHHHQLLPPP PPHQHPEPTP QDPGAGEFMR KRYREADDLF  300
KDTSRQDPVD GATGEAEQKA RAAAAAAAPP PTAPSAMWAV GPNTTGATAA FWMQPAWAFP  360
PGAGAAGNTV QAPLQFMSRS SFPTAMNVTM ADNNNSSNNN LGMLAALNAG GGGRSGEHQH  420
QHEGQSPAEM DHQRRANGGG GEAGGAASSQ FRMIINQFAI VRGFTSPVIY LNHENPIKVA  480
EN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0044900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205390.0AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616519.11e-169transcription factor PCF3
SwissprotQ53PH20.0PCF3_ORYSJ; Transcription factor PCF3
TrEMBLI1QY570.0I1QY57_ORYGL; Uncharacterized protein
STRINGORGLA11G0044900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.19e-37TCP family protein