PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ORGLA11G0038200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 484aa MW: 55313.1 Da PI: 6.7735

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA11G0038200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.8	1.1e-26	163	259	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++++++++ + ORGLA11G0038200.1 163 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHTL 254 7*******************8744455667777******************************************55***** PP trihelix 82 fdqle 86 +d+++ ORGLA11G0038200.1 255 LDHMD 259 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.8E-20	161	284	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
NIHVLDFQKF IPNCHFRLYA CASSCTPVSI LYGTNKKLKC LGDRFGEMEG SNPPGNMSQG 60 PSYGSLDLHG IPKQMHPPNS GNQGFNQPQI PGNFTIPMDR VTEPDNISDR VQLGQHGKIA 120 HHHHQHHHRH HSKNRGSDEE EHDMNEDAAD GKDMKGSPWH RMKWTDSMVK LLITAVSYTG 180 EDPGADLGGG RRNYSMMQKK GKWKAISKVM GERGCHVSPQ QCEDKFNDLN KRYKRLTDIL 240 GRGTACNVVE NHTLLDHMDI SEKMKEDARK ILNSKHLFYE EMCSYHNNNR ISLPEDPALQ 300 QALQLALRCK EDNDFMRHAS GDAELDDDQS EDSDYEENEE EHRAVDTNIR APSMHKRMWH 360 VVDHGDVGFV TSCSNDGSGR SDPYDVLDIN KPFPDGADLA LVQKDLALKA ADIQKHRLQI 420 ETKAVQLAKQ RLKWERFRKN KDLELEKLAL ENEQMMLQNK RFELDLRHKE LELEIKIKGN 480 ANHP

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

NIHVLDFQKF IPNCHFRLYA CASSCTPVSI LYGTNKKLKC LGDRFGEMEG SNPPGNMSQG  60
PSYGSLDLHG IPKQMHPPNS GNQGFNQPQI PGNFTIPMDR VTEPDNISDR VQLGQHGKIA  120
HHHHQHHHRH HSKNRGSDEE EHDMNEDAAD GKDMKGSPWH RMKWTDSMVK LLITAVSYTG  180
EDPGADLGGG RRNYSMMQKK GKWKAISKVM GERGCHVSPQ QCEDKFNDLN KRYKRLTDIL  240
GRGTACNVVE NHTLLDHMDI SEKMKEDARK ILNSKHLFYE EMCSYHNNNR ISLPEDPALQ  300
QALQLALRCK EDNDFMRHAS GDAELDDDQS EDSDYEENEE EHRAVDTNIR APSMHKRMWH  360
VVDHGDVGFV TSCSNDGSGR SDPYDVLDIN KPFPDGADLA LVQKDLALKA ADIQKHRLQI  420
ETKAVQLAKQ RLKWERFRKN KDLELEKLAL ENEQMMLQNK RFELDLRHKE LELEIKIKGN  480
ANHP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA11G0038200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC120533	0.0	AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615140.1	0.0	uncharacterized protein LOC4349866 isoform X1
Refseq	XP_015615141.1	0.0	uncharacterized protein LOC4349866 isoform X1
TrEMBL	I1QXZ0	0.0	I1QXZ0_ORYGL; Uncharacterized protein
STRING	ORGLA11G0038200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	4e-84	sequence-specific DNA binding transcription factors