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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA11G0035200.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 425aa MW: 46815.1 Da PI: 5.4979 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA11G0035200.1 | genome | AGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 12.4 | 0.00029 | 230 | 267 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
R+ i +++ eLre++P+ a K s + Lek+v+++ Lq
ORGLA11G0035200.1 230 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 267
67799************66......999999********99998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010078 | Biological Process | maintenance of root meristem identity |
GO:0010089 | Biological Process | xylem development |
GO:0010479 | Biological Process | stele development |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 425 aa
Download sequence Send
to blast |
MNNMDGCKPP GLSLERTSPL FMEQSVENDL FDILGPQFHH LCHNAGADLV HWTDAKPESS 60 DRDVPESSIH ADSAPLFSSR DNELYSGIFS LTDTDQLLDA VISNVNPAGK QSSDDSASCK 120 TSLTDIPATS YLCSKEMKQC GSSGVPSVLI KNEFAQFIKQ PCLAENAEDG CLSQNNGMHK 180 SQIRLWIESG QSMKCESASA SNSKGLDTPS KANRKRSRPG ESPKPRPKDR QLIQDRIKEL 240 REMVPNGAKC SIDALLEKTV KHMLFLQSVT KHADKLKDST ESKILGSENG PVWKDYFEGG 300 ATWAFDVGSQ SMTCPIIVED LDRPRQMLVE MICEDRGIFL EIADFIKGLG LTILRGAMEA 360 RKSKIWARFT VEANRDVTRM EIFLSLVRLL EPNCDSSGAA ENANNVNMPL GLVHQPVIPA 420 TGRIQ
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK106579 | 0.0 | AK106579.1 Oryza sativa Japonica Group cDNA clone:002-111-C10, full insert sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G31280.1 | 7e-58 | conserved peptide upstream open reading frame 7 |