PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA11G0023500.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 350aa    MW: 38266.2 Da    PI: 6.992
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA11G0023500.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS197.58.3e-611631879307
               GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLak 167
                        aa++ f+e+sP++k+++++ N+aI+eave+e+ vH++ ++   +q+ QW+ Ll++L  Rpegpp  +R+T+v++    + e l +++e  ++
  ORGLA11G0023500.1  16 AARRGFFELSPFPKVAFVVGNRAIVEAVENESLVHVVGMSgpFTQPCQWIQLLHELRRRPEGPPrVVRLTVVHD----DGELLAKMEELVSD 103
                        67788**********************************86679****************9988789*******....************** PP

               GRAS 168 fAeelgvpfefnvlvakrledleleeL....rvkpgEalaVnlvlqlhrll......................................... 214
                         Aeelg++f+f+  v+ +ledl++++L    ++k+gEal+V++ lqlhrll                                         
  ORGLA11G0023500.1 104 EAEELGMEFQFHG-VVGQLEDLDFSNLrnvlEIKSGEALVVSCTLQLHRLLaadddamyssrsahlnqmasiaqlqhmavnscpsssgggsv 194
                        *************.7999****9999866667889********************************************************* PP

               GRAS 215 ...........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                                                   + +++l     ++L++v+ lsPk++vv+eq+adhn+ sF +rf+eal++y+a+fdsl+a ++++s
  ORGLA11G0023500.1 195 qykdddpyrspatpltfvsppvstphfQTPAAL----ASFLSAVRALSPKILVVAEQDADHNGVSFRKRFCEALHHYAAVFDSLDAAAATTS 282
                        ********************9986555555555....55*********************************************99988888 PP

               GRAS 280 ........eerikvErellgreivnvvacegaerre 307
                                +er+ vEr+++g+ei+ v+   ga+rr 
  ORGLA11G0023500.1 283 aasrlwspDERAQVERVVVGEEIKGVLLRDGAHRRG 318
                        888999999***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.81350IPR005202Transcription factor GRAS
PfamPF035142.9E-5816318IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
RLGHPSVYLD RRSVRAARRG FFELSPFPKV AFVVGNRAIV EAVENESLVH VVGMSGPFTQ  60
PCQWIQLLHE LRRRPEGPPR VVRLTVVHDD GELLAKMEEL VSDEAEELGM EFQFHGVVGQ  120
LEDLDFSNLR NVLEIKSGEA LVVSCTLQLH RLLAADDDAM YSSRSAHLNQ MASIAQLQHM  180
AVNSCPSSSG GGSVQYKDDD PYRSPATPLT FVSPPVSTPH FQTPAALASF LSAVRALSPK  240
ILVVAEQDAD HNGVSFRKRF CEALHHYAAV FDSLDAAAAT TSAASRLWSP DERAQVERVV  300
VGEEIKGVLL RDGAHRRGTT GCGNGRRAWR WPGSPACRSA TPPSGRGTTW
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA11G0023500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3780340.0FQ378034.1 Oryza glaberrima chromosome 11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616103.10.0scarecrow-like protein 3
TrEMBLI1QXJ30.0I1QXJ3_ORYGL; Uncharacterized protein
STRINGORGLA11G0023500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-41scarecrow-like 3