PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA11G0005800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 17549 Da PI: 6.931 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.6 | 5.1e-44 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +Ca+Ck+lrr+C+++Cv+apyfpae++++fa+vh++FGasnv+k+l ++p+ +r+da+sslvyeA+ar+rdPvyG+v+ i+ lq+q++ql+ ORGLA11G0005800.1 11 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQM 102 7******************************************************************************************* PP DUF260 93 elallkee 100 +lal+++e ORGLA11G0005800.1 103 QLALAHAE 110 ***99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.68 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-43 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MAGSGSGSGT PCASCKLLRR RCTSECVFAP YFPAEEAQRF AMVHRVFGAS NVSKMLLDVP 60 PPQRPDAVSS LVYEANARMR DPVYGCVAAI SFLQNQVSQL QMQLALAHAE TAALQLQLQQ 120 QHQDQDDHHH QQCILENAAA HHQLMLQEAF LKKESMWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-47 | 2 | 110 | 2 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-47 | 2 | 110 | 2 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA11G0005800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT828113 | 0.0 | CT828113.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI020B08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618081.1 | 1e-112 | LOB domain-containing protein 12 | ||||
Refseq | XP_015618082.1 | 1e-112 | LOB domain-containing protein 12 | ||||
Refseq | XP_015618083.1 | 1e-112 | LOB domain-containing protein 12 | ||||
Refseq | XP_025877106.1 | 1e-112 | LOB domain-containing protein 12 | ||||
Refseq | XP_025877964.1 | 1e-112 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 4e-55 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A2ZHA4 | 1e-113 | A2ZHA4_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QX16 | 1e-113 | I1QX16_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA11G0005800.1 | 1e-114 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-50 | LBD family protein |
Publications ? help Back to Top | |||
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