PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0146100.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 670aa    MW: 72178.6 Da    PI: 8.4651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0146100.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12495540454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  ORGLA10G0146100.1 495 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 540
                        799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.9E-5139219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39491540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-18494567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.03E-14494544No hitNo description
Gene3DG3DSA:4.10.280.102.1E-18495562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10495540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16497546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
WRRSWPPPTS RPSRGGRQQQ VLPPPAAAPA AAAFNQDTLQ QRLQSIIEGS RETWTYAIFW  60
QSSIDVSTGA SLLGWGDGYY KGCDDDKRKQ RSSTPAAAAE QEHRKRVLRE LNSLIAGAGA  120
APDEAVEEEV TDTEWFFLVS MTQSFPNGLG LPGQALFAAQ PTWIATGLSS APCDRARQAY  180
TFGLRTMVCL PLATGVLELG STDVIFQTGD SIPRIRALFN LSAAAASSWP PHPDAASADP  240
SVLWLADAPP MDMKDSISAA DISVSKPPPP PPHQIQHFEN GSTSTLTENP SPSVHAPTPS  300
QPAAPPQRQQ QQQQSSQAQQ GPFRRELNFS DFASNGGAAA PPFFKPETGE ILNFRNDSSS  360
GRRNPSPAPP AATASITTAP GSLFSQHTPT LTAAANDAKS NNQKRSMEAT SRASNTNNHP  420
AATANEGMLS FSSAPTTRPS TGTGAPAKSE SDHSDLEASV REVESSRVVA PPPEAEKRPR  480
KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAISYINEL  540
RGKLTALETD KETLQSQMES LKKERDARPP APSGGGGDGG ARCHAVEIEA KILGLEAMIR  600
VQCHKRNHPA ARLMTALREL DLDVYHASVS VVKDLMIQQV AVKMASRVYS QDQLNAALYT  660
RIAEPGTAAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-62342224195Transcription factor MYC3
4rqw_B5e-62342224195Transcription factor MYC3
4rs9_A5e-62342224195Transcription factor MYC3
4yz6_A5e-62342224195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1476484KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0146100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0607550.0AC060755.9 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence.
GenBankAK2880820.0AK288082.1 Oryza sativa Japonica Group cDNA, clone: J075172G09, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY5364280.0AY536428.1 Oryza sativa MYC protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614012.20.0transcription factor MYC2-like
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLI1QW780.0I1QW78_ORYGL; Uncharacterized protein
STRINGORGLA10G0146100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-123bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]