PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA10G0146100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 670aa MW: 72178.6 Da PI: 8.4651 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 495 | 540 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L ORGLA10G0146100.1 495 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 540 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.9E-51 | 39 | 219 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.39 | 491 | 540 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-18 | 494 | 567 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.03E-14 | 494 | 544 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-18 | 495 | 562 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-10 | 495 | 540 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-16 | 497 | 546 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009269 | Biological Process | response to desiccation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:2000068 | Biological Process | regulation of defense response to insect | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
WRRSWPPPTS RPSRGGRQQQ VLPPPAAAPA AAAFNQDTLQ QRLQSIIEGS RETWTYAIFW 60 QSSIDVSTGA SLLGWGDGYY KGCDDDKRKQ RSSTPAAAAE QEHRKRVLRE LNSLIAGAGA 120 APDEAVEEEV TDTEWFFLVS MTQSFPNGLG LPGQALFAAQ PTWIATGLSS APCDRARQAY 180 TFGLRTMVCL PLATGVLELG STDVIFQTGD SIPRIRALFN LSAAAASSWP PHPDAASADP 240 SVLWLADAPP MDMKDSISAA DISVSKPPPP PPHQIQHFEN GSTSTLTENP SPSVHAPTPS 300 QPAAPPQRQQ QQQQSSQAQQ GPFRRELNFS DFASNGGAAA PPFFKPETGE ILNFRNDSSS 360 GRRNPSPAPP AATASITTAP GSLFSQHTPT LTAAANDAKS NNQKRSMEAT SRASNTNNHP 420 AATANEGMLS FSSAPTTRPS TGTGAPAKSE SDHSDLEASV REVESSRVVA PPPEAEKRPR 480 KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAISYINEL 540 RGKLTALETD KETLQSQMES LKKERDARPP APSGGGGDGG ARCHAVEIEA KILGLEAMIR 600 VQCHKRNHPA ARLMTALREL DLDVYHASVS VVKDLMIQQV AVKMASRVYS QDQLNAALYT 660 RIAEPGTAAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 5e-62 | 34 | 222 | 4 | 195 | Transcription factor MYC3 |
4rqw_B | 5e-62 | 34 | 222 | 4 | 195 | Transcription factor MYC3 |
4rs9_A | 5e-62 | 34 | 222 | 4 | 195 | Transcription factor MYC3 |
4yz6_A | 5e-62 | 34 | 222 | 4 | 195 | Transcription factor MYC3 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 476 | 484 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00084 | PBM | Transfer from AT1G32640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA10G0146100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC060755 | 0.0 | AC060755.9 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence. | |||
GenBank | AK288082 | 0.0 | AK288082.1 Oryza sativa Japonica Group cDNA, clone: J075172G09, full insert sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY536428 | 0.0 | AY536428.1 Oryza sativa MYC protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614012.2 | 0.0 | transcription factor MYC2-like | ||||
Swissprot | Q336P5 | 0.0 | MYC2_ORYSJ; Transcription factor MYC2 | ||||
TrEMBL | I1QW78 | 0.0 | I1QW78_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA10G0146100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4452 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-123 | bHLH family protein |
Publications ? help Back to Top | |||
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