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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA10G0139200.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 315aa MW: 33545.7 Da PI: 9.1253 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA10G0139200.1 | genome | AGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 62.3 | 1.1e-19 | 35 | 120 | 5 | 86 |
trihelix 5 qevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
e+laLiea+r+++e lr+g+l++ +W++v+ ++ + ++s +qC++k+e+l+kry+++++++ +r+++ ++p+f l+
ORGLA10G0139200.1 35 AETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 120
79********************************99998888899**************************98443..47****9886 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MSSSSSPPPN PDALSSPDLP PLAAPAAAAA AAAAAETLAL IEAYRDRWEG LRKGNLRASD 60 WDDVAGAVTA RCGRFPTATH KSGVQCRHKI EKLRKRYRAE RARAAGRSKG PKWPFFPLLH 120 DLAGGGAPDP SPNPIIKIKS KGPAAAAASP SPASPSPVSS PSSEEDEEEE AAADAGRSRS 180 LHGLISNGGS GSGLRFTIPK ASRSKPVAQR EQPTAIKVEK SEEDAEAEAM AEVASALRAV 240 GDKFLRMEER RLEISLQIEK ERMESEMKRT QTLLDAQQLF VEAFLGKQQH HHHHHKKAKV 300 ISAAAAAATA AMDED
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC084763 | 0.0 | AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence. |
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |