PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0133200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 464aa    MW: 48744.6 Da    PI: 6.9847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0133200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-16280325555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  ORGLA10G0133200.1 280 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 325
                        *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.025275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-19278346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18280333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-18280329No hitNo description
PfamPF000101.0E-13280325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MNQCVPSWDL DDPVGGGGIG GGGGGGHRVV SGGGGAFMPV AVPTSDQYYE VAELTWEKGN  60
ISSHGLLLNR PAPPKFPPHQ QLQAAMGGGG GGGVVGDRET LEAVVGEAAA RSSSSSHLAA  120
RARPVPAPWL GSVGVVAAAD ALVPCDADAA EGRSKRPRVV VGEDGRRACA SQGSAAPGRR  180
GESTLLTLDA CCGTAADDVC GFTTTTNNST SLEDRTEDKG SPETENTSIA GGASDSRCFS  240
RRSQSQRGGM CDEDEHVVIR GEGAMRSSIS TKRSRAAAIH NESERKRRDR INQKMKTLQK  300
LVPNSSKTDK ASMLDEVIDY LKQLQAQVQV MSRMGSMMMP MGMAMPQLQM SVMAQMAQMA  360
QIGLSMMNMG QAGGYAPMHM HTPPFLPVSW DAAASSSSAA AADRPPQPTG AATSDAFSAF  420
LASQAAQQNA QQPNGMEAYN RMMAMYQKLN HQQQQQDQPS NSRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0133200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879250.0AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612716.10.0transcription factor UNE10 isoform X1
RefseqXP_015612717.10.0transcription factor UNE10 isoform X1
TrEMBLI1QVU90.0I1QVU9_ORYGL; Uncharacterized protein
STRINGORGLA10G0133200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-36bHLH family protein