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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA10G0124500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 384aa MW: 41182 Da PI: 4.8263 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.3 | 7.7e-10 | 203 | 245 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ +iL ++ Y+k+L ORGLA10G0124500.1 203 MAERRRRKRLNDRLSMLRSVVPRiS------KMDRTSILGDTIGYVKEL 245 79*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.665 | 196 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-14 | 200 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-11 | 202 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-14 | 203 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-7 | 203 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MELMDDDGSS SLLEELMAPL RRGTPTTTPE DLWLQAYPMM MSPMCGDGVM LGDLLVGGGN 60 ARNTLASPPP PPPPPSFPLP VPLTTTTPCP PLHEVSFEFD SIDCLGEVCN PYKRSGGAVR 120 ATAAAQVMVA AMDPRREAAS SAVAVAAVEE EERCKARRGA GGGGDSGELA PMFVFGGGGG 180 AAASVRPRSC RPPQPGAPSK NLMAERRRRK RLNDRLSMLR SVVPRISKMD RTSILGDTIG 240 YVKELMDRIK NLQVEAATGD SSSSSTENLS MLKLNTLKPP PSSSSGEETP LIRNSTRFEV 300 ERRENGNTRI EMACAAIPEL LPSTLAALEA LGVEIEQCVI SCFDDFAMQA SCLQDDKKRE 360 MTRDTEEIKQ TLFRSAGYGD GCLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 211 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA10G0124500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063669 | 0.0 | AK063669.1 Oryza sativa Japonica Group cDNA clone:001-119-D04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613752.2 | 0.0 | transcription factor TDR-like | ||||
Swissprot | Q9LSL1 | 2e-54 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | I1QVL2 | 0.0 | I1QVL2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA10G0124500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18317 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 8e-54 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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