PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YA

Protein Properties

Length: 166aa MW: 18332.8 Da PI: 10.351

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA10G0076800.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	75.7	9.1e-24	67	123	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++I++RRq+R+ + +e+k+ ++ rk++l e+R+k+A+ R+Rg+gGrF ORGLA10G0076800.1 67 DEPIYVNAKQYHAIIRRRQRRKIVGSEDKV-AAIRKRILVEARQKQAKLRRRGKGGRF 123 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.4E-17	65	126	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	22.337	66	126	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.9E-17	68	123	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.5E-13	69	91	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.5E-13	100	123	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MGFGESTQGN QRKLDGPGKV STELSLVNLE AKNLHPKPEC NQPLEHIPTK GMKCTPLLPL 60 PTEHADDEPI YVNAKQYHAI IRRRQRRKIV GSEDKVAAIR KRILVEARQK QAKLRRRGKG 120 GRFISIEHPL ELSMDDQISK NGGSASPSSS TVSENSSNVN GFTGDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-13	67	125	2	60	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA10G0076800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU847005	0.0	EU847005.1 Oryza sativa Japonica Group clone KCS241E10 CCAAT-binding transcription factor mRNA, complete cds.
GenBank	HQ731478	0.0	HQ731478.1 Oryza sativa Japonica Group NF-Y transcription factor 21 (NF-Y21) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613426.1	1e-119	nuclear transcription factor Y subunit A-3
TrEMBL	A0A0E0BA54	1e-119	A0A0E0BA54_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0IRU3	1e-119	A0A0E0IRU3_ORYNI; Uncharacterized protein
TrEMBL	I1QU85	1e-119	I1QU85_ORYGL; Uncharacterized protein
STRING	ONIVA10G08670.1	1e-120	(Oryza nivara)
STRING	ORGLA10G0076800.1	1e-120	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17468	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-17	nuclear factor Y, subunit A3