PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0067600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 330aa    MW: 34799.2 Da    PI: 7.1384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0067600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.7e-15111162155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  ORGLA10G0067600.1 111 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 162
                        79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-14109166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.00E-15109166No hitNo description
SuperFamilySSF474593.93E-17110172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.412110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-12111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALEAVVYSH GGHFGGYGGG LMGGAPAAPW DVFAAAAAGG GGSWDDPGLF AAEASLDVIQ  60
GVDEWEVDQD QHASSSSKVA ARPPVKAAAA AGKRKRRRAK AAKNREEIES QRMTHIAVER  120
NRRRQMNEYL AVLRSLMPPS YAQRGDQASI VGGAINYVRE LEQLLQTLEA RRTIKDHIDG  180
GAGESPSPFA GFFAFPQYST ATSGHGGGGD AHSRIVVKPA ETTTTAAGGG AGAAIADIEA  240
SMVEGHASVK VQARRRPRQL LKLVAGLHQL GLTTLHLNVT TVAAMAMYSF SLKVEDGCKL  300
GSVEEIATAV HEILERMQEE QAFADAKTSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297KRKRRR
29397RKRRR
3111122RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0067600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588090.0AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613301.10.0transcription factor bHLH96
SwissprotQ9C7T42e-77BH096_ARATH; Transcription factor bHLH96
TrEMBLI1QTZ30.0I1QTZ3_ORYGL; Uncharacterized protein
STRINGORGLA10G0067600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]