PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0064900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 324aa    MW: 33966.3 Da    PI: 8.7234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0064900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19126175255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+++tae+Aa a++ a+ +l+g
  ORGLA10G0064900.1 126 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEDAALAYDGAAFRLRG 175
                        59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-28125183No hitNo description
SuperFamilySSF541714.64E-22126184IPR016177DNA-binding domain
SMARTSM003801.2E-35126189IPR001471AP2/ERF domain
PROSITE profilePS5103223.143126183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-31126184IPR001471AP2/ERF domain
PRINTSPR003671.2E-10127138IPR001471AP2/ERF domain
PfamPF008474.5E-13127175IPR001471AP2/ERF domain
PRINTSPR003671.2E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDRQWRCLAA AAASTSGSSS KLPPLPMALG GAVEYGQLVH GAAVPVAPFV VDAEQQSLSP  60
ATAMVLGAGW YNYNLVTPAQ AAQLHHRLRR AVGAAPCAMK RCGGMAAAAA AGRLGLVGPA  120
PVQAKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTYDTAE DAALAYDGAA FRLRGDAARL  180
NFPQLRRGGR HHAPPLSASV DAKILQATTS TTADDPAAAA APPSTNTPPS PRVVKTEPGC  240
CSVSEASTTT TADAADVSST GSSPSPTSSN PGATATPPPP PPRPPPLPET MQQLDFTEAP  300
WDEADGFALR RYPSWEIDWD AILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20123183263ATERF1
3gcc_A4e-20123183263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0064900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1073140.0AC107314.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence.
GenBankAC1345160.0AC134516.1 Oryza sativa Japonica Group chromosome 10 clone OJA1208D02, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613762.11e-165ethylene-responsive transcription factor RAP2-13
TrEMBLI1QTW60.0I1QTW6_ORYGL; Uncharacterized protein
STRINGORGLA10G0064900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-29ERF family protein