PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA10G0001900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 302aa    MW: 33385.4 Da    PI: 5.0964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA10G0001900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11133179455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++ + f +L +++P+      +K +K+++L  ++eY+++L+
  ORGLA10G0001900.1 133 EHVIAERKRREKMHQQFTTLASIVPEI-----TKTDKVSVLGSTIEYVHHLR 179
                        6999**********************7.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15133196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9133178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14133187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-10134183No hitNo description
SMARTSM003531.9E-12135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDSSAKQWLA ELENDDDPRG LEHLDPLSMQ QLAESLTNEL FNQPQEQQEE QHGYHNPSLR  60
VLPFVGDINK PEGHTPAAAA IRDSFFSLTN GSSSSLNFSA LEQQQDSGPM TKFCSPLSEM  120
KRGGRRATSS MQEHVIAERK RREKMHQQFT TLASIVPEIT KTDKVSVLGS TIEYVHHLRE  180
RVKVLQDIQS MGSTQPPISD ARSRAGSGDD EDDDGNNNEV EIKVAANLQG TTVLLRVVCP  240
EKKGVLIKLL TELEKLGLST MNTNVVPFAD SSLNITITAQ IDNGSCTTVE LVKNLKSTLR  300
NF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERKRRE
2138143RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA10G0001900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693240.0AC069324.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0071K19, complete sequence.
GenBankAC1451270.0AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613484.10.0transcription factor bHLH18
TrEMBLI1QS360.0I1QS36_ORYGL; Uncharacterized protein
STRINGORGLA10G0001900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.13e-26bHLH family protein