PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA10G0001600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 26836.3 Da PI: 8.057 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.5e-18 | 89 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k ORGLA10G0001600.1 89 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 143 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.8 | 1.9e-40 | 89 | 177 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr + ORGLA10G0001600.1 89 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 177 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-18 | 76 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-15 | 87 | 149 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 87 | 148 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.3E-15 | 89 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.81E-15 | 89 | 146 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.5E-10 | 145 | 178 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.0E-21 | 145 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAQDDEDVGL ALGLSLGSGG HRRQRESRDE AAASLLTLRL PAESGGQPQV VVKREVVRAE 60 EEEYEYEYER ALYSSSAAAA DDDEGCNSRK KLRLSKEQSA LLEDRFKEHS TLNPKQKVAL 120 AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CELLKRCCET LTEENRRLHR ELQQLRALTH 180 STAAGFFMAT TLPVPAATLS ICPSCERLAT AAAAGASPTA AADRTNKPTA PHLFSPFAKS 240 AAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 93 | SRKKLRL |
2 | 137 | 145 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA10G0001600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069324 | 1e-174 | AC069324.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0071K19, complete sequence. | |||
GenBank | AC099400 | 1e-174 | AC099400.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0096E22, complete sequence. | |||
GenBank | AC145127 | 1e-174 | AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence. | |||
GenBank | AP014966 | 1e-174 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612921.1 | 1e-138 | homeobox-leucine zipper protein HOX15 | ||||
Swissprot | Q7G737 | 1e-139 | HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15 | ||||
TrEMBL | I1QS33 | 1e-176 | I1QS33_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA10G0001600.1 | 1e-177 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-59 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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