PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ORGLA09G0156300.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 165aa MW: 16975.7 Da PI: 7.1961

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0156300.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H ORGLA09G0156300.1 49 FSCNYCHRKFFSSQALGGHQNAH 71 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.52E-6	47	76	No hit	No description
PROSITE profile	PS50157	10.99	49	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MESEPAQVHG GVNLNLRVLE TSPRRRSANG GGGGAAPAAA AAVDPREAFS CNYCHRKFFS 60 SQALGGHQNA HKLERTLAKR SRDIVMTAAV SPSPSSSSSS RAVHGFDGVA GGFFWTAPPY 120 GHAAAAEAAE EDHDVAPPAP PPADGGCGGG RYGRNGEEID LSLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0156300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137592	0.0	AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence.
GenBank	AP005090	0.0	AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611461.1	1e-117	zinc finger protein 2
TrEMBL	A0A0D3H9Z2	1e-115	A0A0D3H9Z2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0B6I5	1e-115	A0A0E0B6I5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0INJ6	1e-115	A0A0E0INJ6_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0QV08	1e-115	A0A0E0QV08_ORYRU; Uncharacterized protein
TrEMBL	I1QR84	1e-115	I1QR84_ORYGL; Uncharacterized protein
TrEMBL	Q653T1	1e-115	Q653T1_ORYSJ; Os09g0558800 protein
STRING	OGLUM09G20140.1	1e-116	(Oryza glumipatula)
STRING	ORUFI09G21000.1	1e-116	(Oryza rufipogon)
STRING	ONIVA09G20570.1	1e-116	(Oryza nivara)
STRING	ORGLA09G0156300.1	1e-116	(Oryza glaberrima)
STRING	OBART09G19440.1	1e-116	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	3e-18	zinc finger protein 2