 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
ORGLA09G0156000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
Trihelix |
| Protein Properties |
Length: 339aa MW: 36509.1 Da PI: 6.9497 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA09G0156000.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 37.4 | 6.8e-12 | 25 | 130 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...t 72
+W+++ + L+ea++ ++ +r+klk +W +++ + ++p+qCk+k+e+++kry+++ + + + +
ORGLA09G0156000.1 25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcamenaaaaaatgkPGSSTAKTPNQCKNKIESMKKRYRAESAAAARAgpaA 116
5*******************************9999999999**********9977778899******************998887763324 PP
trihelix 73 sessstcpyfdqle 86
+++ ++++f +++
ORGLA09G0156000.1 117 AGAGPSWRFFARMD 130
66678999999997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MDALPDAADA APLAAAAAPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWVDIAH 60
EVSAHCAMEN AAAAAATGKP GSSTAKTPNQ CKNKIESMKK RYRAESAAAA RAGPAAAGAG 120
PSWRFFARMD GLLKGPAGSG QPQAELSNSI DLRAPPPAKV EVDVDADFVS QLADAGPGAL 180
SELVSAYANG SIQEKLDKVE NSGQVEGRAA ESDVNVSSPR IKEANEDAEE VDKVWDMSKK 240
RKNTEFDIAK SIELLASSFL KIERARMDLY RETERMRVEA EIKKGEMELK RTEIMAKTHL 300
QIAKLFAKRL KECSSKTGGS SSVTAEVDNH AKKGENGSG
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 1e-47 | sequence-specific DNA binding transcription factors |
