PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

ORGLA09G0149200.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 842aa MW: 92597 Da PI: 6.7424

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0149200.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.5e-29	527	577	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ ORGLA09G0149200.1 527 EKTVSLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 577 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.712	516	597	IPR003035	RWP-RK domain
Pfam	PF02042	9.7E-26	529	577	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.08E-20	734	830	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-24	744	825	No hit	No description
SMART	SM00666	2.2E-18	744	827	IPR000270	PB1 domain
PROSITE profile	PS51745	18.279	744	827	IPR000270	PB1 domain
CDD	cd06407	2.04E-43	745	825	No hit	No description
Pfam	PF00564	2.5E-15	745	825	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MEEGDPQPSI SLARTPSEGA AAAVDLDLLE QLLSADNAWL EVAANTSRSP NFFATPSNCL 60 TDASVATTTP ANSWWIQPSG ASTSVRERFD QALAYIRETQ SDADVLVQLW VPVKGNDGQL 120 VLTTSGQPFT LDQRSNSLIQ FREVSTKYQF SADVASGSSP GLPGRVFIGR LPEWSPDVRY 180 FTSYEYPRIS HAQYLDVHGT MGLPVFERGN YSCLGVIELI MTKQKLNFTS ELNTICSALQ 240 AVNLTSTEVS SIPRTKLNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CAQQGKRGSR 300 HSDENYKYCI STIDAACYVN EPRMQSFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS 360 STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GIADFVLEFF LPTDCEVLEE QKAVLDSLSG 420 TMRSVCQTLR VVTDKEMEDE AMREMNELNS FSPRGKNKVE ELSFGDNTRG DREEASWTTL 480 VGTSQKGSDL AELHTHGMLS HGGHGSSQAG DQTSKEGSKV KKRTKTEKTV SLQVLRQYFA 540 GSLKDAAKSL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL 600 NTLYKDLTNT SVSSDNNLSG SVTVPLANQN NLDFEMHQHH RLSSNIPSTS LSHSSCSQSS 660 DSSPSCSGGA TKHSPQVGAD QVRSGCLPQH SPVQTLQTEA ASINEHFSGQ EAPIDLLQDV 720 AEKANGEQHM SQSPSSPKQT ANVGMRVKVT FGSEKVRFRL KPECDFQELK QEISRRLSIA 780 DMNSLIVKYL DDDSEWVLMT CDADLHECFH VYKLADIQTI KISVHLAASP TTRITIGHTG 840 FS

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MEEGDPQPSI SLARTPSEGA AAAVDLDLLE QLLSADNAWL EVAANTSRSP NFFATPSNCL  60
TDASVATTTP ANSWWIQPSG ASTSVRERFD QALAYIRETQ SDADVLVQLW VPVKGNDGQL  120
VLTTSGQPFT LDQRSNSLIQ FREVSTKYQF SADVASGSSP GLPGRVFIGR LPEWSPDVRY  180
FTSYEYPRIS HAQYLDVHGT MGLPVFERGN YSCLGVIELI MTKQKLNFTS ELNTICSALQ  240
AVNLTSTEVS SIPRTKLNSA SYKDALPEIL EVLRAACITH KLPLAQTWVT CAQQGKRGSR  300
HSDENYKYCI STIDAACYVN EPRMQSFHEA CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS  360
STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GIADFVLEFF LPTDCEVLEE QKAVLDSLSG  420
TMRSVCQTLR VVTDKEMEDE AMREMNELNS FSPRGKNKVE ELSFGDNTRG DREEASWTTL  480
VGTSQKGSDL AELHTHGMLS HGGHGSSQAG DQTSKEGSKV KKRTKTEKTV SLQVLRQYFA  540
GSLKDAAKSL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGAETAFQL  600
NTLYKDLTNT SVSSDNNLSG SVTVPLANQN NLDFEMHQHH RLSSNIPSTS LSHSSCSQSS  660
DSSPSCSGGA TKHSPQVGAD QVRSGCLPQH SPVQTLQTEA ASINEHFSGQ EAPIDLLQDV  720
AEKANGEQHM SQSPSSPKQT ANVGMRVKVT FGSEKVRFRL KPECDFQELK QEISRRLSIA  780
DMNSLIVKYL DDDSEWVLMT CDADLHECFH VYKLADIQTI KISVHLAASP TTRITIGHTG  840
FS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0149200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005679	0.0	AP005679.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1210_A07.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612116.1	0.0	protein NLP1-like isoform X2
Refseq	XP_015612117.1	0.0	protein NLP1-like isoform X2
Refseq	XP_025875998.1	0.0	protein NLP1-like isoform X2
TrEMBL	I1QR13	0.0	I1QR13_ORYGL; Uncharacterized protein
STRING	ORGLA09G0149200.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein