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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORGLA09G0119400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 402aa MW: 42334.2 Da PI: 4.7151 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.7e-09 | 188 | 235 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq ORGLA09G0119400.1 188 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 235 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.88E-10 | 182 | 239 | No hit | No description |
SuperFamily | SSF47459 | 5.89E-17 | 182 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.8E-17 | 184 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.459 | 184 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-6 | 188 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-10 | 190 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MDSDYVAGLL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GGGGGAGLFG 60 LPAAGNAERG GCSREGSSVS DPAWAHATGG GGDNARKRKA PASAAAGKDK DAVVGGGSSP 120 CEVGEAKAPD SKKCKAEVNP KVEEAASDGS VGDRVQKQGK GKNSSKPAAE PPKDYVHVRA 180 RRGQATDSHS LAERVRREKI SQRMKVLQDL VPGCNKVVGK ALMLDEIINY VQSLQQQVEF 240 LSMKLATVNP QLDFGNLSTL LQKDMFQSCG PSVNSVFPLE SAGTAFPFCD QADFFQSFGL 300 GAMENQCSLD LANTALPHTG STQYAFQKQV IAALKNLQST EQMVLTCIYD DNSVCLWFSF 360 QQRDLWEDNA FQYNDEQSQE DAVSAPNFDG QLQAADHTEI EF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | ORGLA09G0119400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059036 | 0.0 | AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651378.1 | 0.0 | transcription factor BHLH089-like | ||||
Swissprot | Q9SRT2 | 1e-58 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | I1QQ65 | 0.0 | I1QQ65_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA09G0119400.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.2 | 9e-53 | bHLH family protein |
Publications ? help Back to Top | |||
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