PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 402aa MW: 42334.2 Da PI: 4.7151

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0119400.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	188	235	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq ORGLA09G0119400.1 188 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 235 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.88E-10	182	239	No hit	No description
SuperFamily	SSF47459	5.89E-17	182	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-17	184	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-6	188	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-10	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MDSDYVAGLL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GGGGGAGLFG 60 LPAAGNAERG GCSREGSSVS DPAWAHATGG GGDNARKRKA PASAAAGKDK DAVVGGGSSP 120 CEVGEAKAPD SKKCKAEVNP KVEEAASDGS VGDRVQKQGK GKNSSKPAAE PPKDYVHVRA 180 RRGQATDSHS LAERVRREKI SQRMKVLQDL VPGCNKVVGK ALMLDEIINY VQSLQQQVEF 240 LSMKLATVNP QLDFGNLSTL LQKDMFQSCG PSVNSVFPLE SAGTAFPFCD QADFFQSFGL 300 GAMENQCSLD LANTALPHTG STQYAFQKQV IAALKNLQST EQMVLTCIYD DNSVCLWFSF 360 QQRDLWEDNA FQYNDEQSQE DAVSAPNFDG QLQAADHTEI EF

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MDSDYVAGLL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GGGGGAGLFG  60
LPAAGNAERG GCSREGSSVS DPAWAHATGG GGDNARKRKA PASAAAGKDK DAVVGGGSSP  120
CEVGEAKAPD SKKCKAEVNP KVEEAASDGS VGDRVQKQGK GKNSSKPAAE PPKDYVHVRA  180
RRGQATDSHS LAERVRREKI SQRMKVLQDL VPGCNKVVGK ALMLDEIINY VQSLQQQVEF  240
LSMKLATVNP QLDFGNLSTL LQKDMFQSCG PSVNSVFPLE SAGTAFPFCD QADFFQSFGL  300
GAMENQCSLD LANTALPHTG STQYAFQKQV IAALKNLQST EQMVLTCIYD DNSVCLWFSF  360
QQRDLWEDNA FQYNDEQSQE DAVSAPNFDG QLQAADHTEI EF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0119400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059036	0.0	AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651378.1	0.0	transcription factor BHLH089-like
Swissprot	Q9SRT2	1e-58	BH062_ARATH; Transcription factor bHLH62
TrEMBL	I1QQ65	0.0	I1QQ65_ORYGL; Uncharacterized protein
STRING	ORGLA09G0119400.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	9e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]