PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0113600.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 611aa    MW: 68316.7 Da    PI: 5.8456
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0113600.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3437.71.1e-133384191353
                        XXXXXXXXXXXXXXXXXXXXXXX...XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3   1 eelkkrmwkdqmllkrlkerkkqll.edkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 
                        e+l +rmwkd+++l+r+ker+ +l  + ++a+++++k + +++qa rkkmsraQDgiLkYMlk mevcna+GfvYgiip+kgkpv+gasd++
  ORGLA09G0113600.1  38 EDLARRMWKDRIKLRRIKERQDRLAlALQQAELDKSKGKPISDQAMRKKMSRAQDGILKYMLKLMEVCNARGFVYGIIPDKGKPVSGASDNI 129
                        89*******************99651556666************************************************************ PP

                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHH CS
               EIN3  92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwge 183
                        raWWkekv+fd+ngpaai+ky+++nl+++++ s+   + +++hsl++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWP+G+e+ww +
  ORGLA09G0113600.1 130 RAWWKEKVKFDKNGPAAIAKYESENLASADAPSS---GIKSQHSLMDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPSGNEDWWIA 218
                        ***************************9988888...88***************************************************** PP

                        HT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.....XXXXX CS
               EIN3 184 lglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.....slrkq 270
                        lgl++ q  ppykkphdlkk+wkv+vLt vikhmsp++++ir+++r+sk+lqdkm+akes ++l vl++ee+++ ++   +s        + 
  ORGLA09G0113600.1 219 LGLPRGQI-PPYKKPHDLKKVWKVGVLTGVIKHMSPNFDKIRNHVRKSKCLQDKMTAKESLIWLGVLQREERLVLSIDNGMSevthhGALEY 309
                        *******9.9****************************************************************999888554555433448 PP

                        XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX................................XXXXXXXXXXXXXXXXXXXXX......X CS
               EIN3 271 spkvtlsceqkedvegkkeskikhvqavktta................................gfpvvrkrkkkpsesakvsskevsrtcq 330
                        ++  t+s+++++dv+g +e   ++++ +++++                                g++   krk+++++ ++++++      q
  ORGLA09G0113600.1 310 RNGDTHSSSNEYDVDGFEEAPLSTSSRDDEQDlspaaqlseehaptrrerakvkrpnqvvpkkaGTKEPPKRKRPRHSVTAIEQE-----VQ 396
                        89999999*******999999899999999889*******************************9********777777776655.....47 PP

                        XXXXXX.XXXXXXXXXXXXXXXX CS
               EIN3 331 ssqfrgsetelifadknsisqne 353
                        ++   +++++++++d+n+++q e
  ORGLA09G0113600.1 397 RADDASEHSRNMIPDMNRLDQVE 419
                        7777788899*******999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.1E-12638288No hitNo description
Gene3DG3DSA:1.10.3180.107.8E-70162294IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.06E-60168291IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MDHLAIIATE LGDSSDFEVE GIQNLTENDV SDEEIEAEDL ARRMWKDRIK LRRIKERQDR  60
LALALQQAEL DKSKGKPISD QAMRKKMSRA QDGILKYMLK LMEVCNARGF VYGIIPDKGK  120
PVSGASDNIR AWWKEKVKFD KNGPAAIAKY ESENLASADA PSSGIKSQHS LMDLQDATLG  180
SLLSSLMQHC DPPQRKYPLE KGTPPPWWPS GNEDWWIALG LPRGQIPPYK KPHDLKKVWK  240
VGVLTGVIKH MSPNFDKIRN HVRKSKCLQD KMTAKESLIW LGVLQREERL VLSIDNGMSE  300
VTHHGALEYR NGDTHSSSNE YDVDGFEEAP LSTSSRDDEQ DLSPAAQLSE EHAPTRRERA  360
KVKRPNQVVP KKAGTKEPPK RKRPRHSVTA IEQEVQRADD ASEHSRNMIP DMNRLDQVEI  420
QGMANQITSF NEEANTSEAL QHRGNTQELA HLPADFNHYG NAQATIATPV SICMRGQAVP  480
YESSDNSRPK TGNIFPQDSD SGFNNMPSSY QTIPPKQPLS LSIMEHHVVP LGIRTPADNS  540
PYSDQIIGSG NSTSVPGDMQ LIDYPFYGEQ DKFAGSSFAG LPLDYISISS PIPDIDDLLL  600
HDDDLMEYLG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A1e-661682919132ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00649PBMTransfer from LOC_Os09g31400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0113600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087580.0AC108758.2 Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence.
GenBankAK0659790.0AK065979.1 Oryza sativa Japonica Group cDNA clone:J013047J08, full insert sequence.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612094.10.0ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_015612095.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-146EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A0D3H8C50.0A0A0D3H8C5_9ORYZ; Uncharacterized protein
TrEMBLI1QQ070.0I1QQ07_ORYGL; Uncharacterized protein
STRINGORGLA09G0113600.10.0(Oryza glaberrima)
STRINGOBART09G14750.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37203779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-148ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]