PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0112900.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 398aa    MW: 41670.6 Da    PI: 9.147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0112900.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13328373655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  ORGLA09G0112900.1 328 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 373
                        689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.243322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16325383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.55E-13326377No hitNo description
Gene3DG3DSA:4.10.280.103.4E-15327385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-13328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10328373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MYGAPVSKDL SLQPAGVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFVLPG GGGGGQLQLQ  60
QQRPGSPDHA ADTVLARFLA GHGGHDNKPP RPAAHFAPPE DSMASHQQQL MYQSHQQQQQ  120
MASAMEGLYR TVSSGGTEST AAAAGNSLLR QSSSPAGFLN HLTMDNGYGN MLRAGMGGGG  180
GGGDPRLKGQ LSFSSRQGSV MSQISEMGSE DEELAGGGGS PEAGSNGGGA ARGGYGGGYA  240
MGSSAWEEPS PPATSLLPDS SLPSKRPRDD LPRQLSLPAA SKNSSKPPSS ASAAASPEMA  300
AIEKFLQFQD AVPCKIRAKR GCATHPRSIA ERVRRTRISE RIRKLQELVP NMEKQTNTAD  360
MLDLAVDYIK ELQKQVKVLN DSRSSCTCSA SKQKHFAG
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0112900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209020.0AK120902.1 Oryza sativa Japonica Group cDNA clone:J023030N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612612.10.0transcription factor bHLH130
TrEMBLI1QQ000.0I1QQ00_ORYGL; Uncharacterized protein
STRINGORGLA09G0112900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-37bHLH family protein