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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
ORGLA09G0111700.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
C2H2 |
| Protein Properties |
Length: 290aa MW: 30952.6 Da PI: 7.2659 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| ORGLA09G0111700.1 | genome | AGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11 | 0.0013 | 119 | 134 | 1 | 16 |
EEETTTTEEESSHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnL 16
++Cp C k+F+r n+
ORGLA09G0111700.1 119 FSCPVCFKTFNRYNNM 134
89********998776 PP
|
| 2 | zf-C2H2 | 13.2 | 0.00027 | 207 | 227 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C +Cgk F k + ++H +++
ORGLA09G0111700.1 207 CRKCGKAFAVKGDWRTHEKNC 227
*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MDVEGSGSGC CAAEAAAAGD DDADVTVALH IGLPSPTAAA DLISGLSSAA GRRSSTARRD 60
EEEDEAEEAG GASRDDGDGG DAADAAAPLG FASTPIGRLN KGQYWIPTPS QILIGPTQFS 120
CPVCFKTFNR YNNMQMQMHM WGHGSQYRKG PESLRGIQPT AMLRLPCYCC AAGCRNNIDH 180
PRAKPLKDFR TLQTHYKRKH GLKPFLCRKC GKAFAVKGDW RTHEKNCGKL WYCLCGSEFK 240
HKRSLKDHAR AFGHGHGALG GAAALDDDDD GAVSDLDHDS SSTAPAARSL
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EF626940 | 0.0 | EF626940.1 Oryza sativa (indica cultivar-group) WIP4 (WIP4) mRNA, complete cds. |
