PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORGLA09G0105100.1

Organism

Oryza glaberrima

Taxonomic ID

4538

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 452aa MW: 47929.4 Da PI: 6.055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORGLA09G0105100.1	genome	AGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.2e-09	280	328	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq ORGLA09G0105100.1 280 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 328 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.29E-11	275	332	No hit	No description
SuperFamily	SSF47459	6.8E-17	275	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.65	277	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-16	278	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-7	280	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-11	283	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MLCSAGYYYA LGIRSLEPRL GDSMDMSESS EKGMESNASP GPGNGIPVEW QSQFSSAFAC 60 QPSVAAQHQQ HAMMDSFAVA SAGLWASSDV VSAMSSAAPP RGAGFLAPVP GFLQQGLGHF 120 PVDSGFIERA ARSTCFGGGM MAGGPYGAAD QAMGDAFGGT AEGLMDHHRN VGNDKAEEFA 180 GNGHDEVPSS EVAGGDCSSI GSDSKKRRRP NEVMGTDQVH SSNLPSDSAN ESAHSKDKGE 240 ESSPATTNGG KSKGKGAKET SESQKEEYIH VRARRGQATN SHSLAERLRR EKISERMKLL 300 QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDLNIE GLLSKDLLRF 360 PGVPSSSIGF SPEMMHPQLQ LSQPGLIHGG TAGMANPDVF RRIIQAQLGA KDGSQQMPHS 420 LNGSFSDVSQ MAYPSLGSQD LSIRPSQDGF QM

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MLCSAGYYYA LGIRSLEPRL GDSMDMSESS EKGMESNASP GPGNGIPVEW QSQFSSAFAC  60
QPSVAAQHQQ HAMMDSFAVA SAGLWASSDV VSAMSSAAPP RGAGFLAPVP GFLQQGLGHF  120
PVDSGFIERA ARSTCFGGGM MAGGPYGAAD QAMGDAFGGT AEGLMDHHRN VGNDKAEEFA  180
GNGHDEVPSS EVAGGDCSSI GSDSKKRRRP NEVMGTDQVH SSNLPSDSAN ESAHSKDKGE  240
ESSPATTNGG KSKGKGAKET SESQKEEYIH VRARRGQATN SHSLAERLRR EKISERMKLL  300
QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDLNIE GLLSKDLLRF  360
PGVPSSSIGF SPEMMHPQLQ LSQPGLIHGG TAGMANPDVF RRIIQAQLGA KDGSQQMPHS  420
LNGSFSDVSQ MAYPSLGSQD LSIRPSQDGF QM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	ORGLA09G0105100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121418	0.0	AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612417.1	0.0	transcription factor bHLH49 isoform X1
Refseq	XP_015612418.1	0.0	transcription factor bHLH49 isoform X1
Refseq	XP_015612419.1	0.0	transcription factor bHLH49 isoform X1
Refseq	XP_025876117.1	0.0	transcription factor bHLH49 isoform X1
Swissprot	Q9CAA9	4e-69	BH049_ARATH; Transcription factor bHLH49
TrEMBL	I1QPS2	0.0	I1QPS2_ORYGL; Uncharacterized protein
STRING	ORGLA09G0105100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	3e-69	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]