PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0001000.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 330aa    MW: 36425.1 Da    PI: 10.4856
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0001000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.91e-11118211297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafy.efvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                        +f+r ws  De+++L ++++ ++++g  +  d+++++   +++s++  ++    l +K+ +LK+ + + +     ++ p+ + ++ +  f+l
  ORGLA09G0001000.1 118 AFERSWSRADELTILEAMVNHANTHG-GALPDTSDLFaALASSSLDrRDADLPKLADKVHKLKRWYDNARLP---QRCPTDDDDDTRRLFQL 205
                        699******************99999.556666665505566677525788899**************9988...6777778888899**** PP

             DUF573  92 skkiWg 97 
                        + k+Wg
  ORGLA09G0001000.1 206 CGKVWG 211
                        *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-16119211IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSSWWSWRSL FSSLANANGG GSNADASSGS GTSSPLVREA QQAAARRRST RTKKPPEEEA  60
AGSQPQPKTR PSPASKASKA SKAKALLQLG DGEPKKKPAP TPTPTQKRSN KRKRVAPAFE  120
RSWSRADELT ILEAMVNHAN THGGALPDTS DLFAALASSS LDRRDADLPK LADKVHKLKR  180
WYDNARLPQR CPTDDDDDTR RLFQLCGKVW GPPSTVLRTS PRQRHKVVGV LVQGNGANPQ  240
QAAAPKVKEK RVRRELSELY VLYPSLAQEV KAHANEYGEL IGTAFQFIGD DEARCYDDRY  300
RKMLVDKLNM KKEHADLTRS LLCTLAGYIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194113KKKPAPTPTPTQKRSNKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0001000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060580.0AP006058.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16.
GenBankAP0060610.0AP006061.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0414D03.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611454.10.0uncharacterized protein LOC9269165
TrEMBLA0A0D3H3F00.0A0A0D3H3F0_9ORYZ; Uncharacterized protein
TrEMBLI1QLT10.0I1QLT1_ORYGL; Uncharacterized protein
STRINGORGLA09G0001000.10.0(Oryza glaberrima)
STRINGOBART09G00120.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162861010