PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA09G0000200.1
Organism
Oryza glaberrima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 395aa    MW: 44424.2 Da    PI: 10.4877
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA09G0000200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57331.35.7e-1080167397
             DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                        fqr ws +De+++L ++   ++++gk       +++  ++++++ k  + + l +K+r + ++  ++ k+         +++hd+  ++ls+
  ORGLA09G0000200.1  80 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSR 163
                        9************************65..56789999999999865278899********9999998888......556899********** PP

             DUF573  94 kiWg 97 
                         +W 
  ORGLA09G0000200.1 164 NVWV 167
                        ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-1380166IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAPTLPVVPA HGEDKKKKKK KKKKPSQEEE ALRLPLPPPD RKRKKASEPV NSPERAKKKK  60
KTATPHEPPS AKQQKRPLPF QRTWSPNDEV LILEAMAAHR QEHGKVPTAA ELFPVLNGRL  120
DRKRLTYKKL ADKLRTFMRR HGRDAKNGPP TQAHDRRLYD LSRNVWVSQT QPPNLIANAN  180
SNIAGGQPNQ HDAMPTAGKA FVKMRDSYPN LTQALLLLVG TDLEKALTAI DETKAQALDL  240
KVSNLKKELS EAVMESATIQ STESSKIPCF PSTKLQPEFG AEIEKNFQLE HLDEMKGAQV  300
KLARMEQEIL ELKQNFLAFQ SQQMVDSKQQ QDKSSAKGII CESSESGLRS IVADNNILCN  360
TLQKEMVVQQ KLSCGKTKEV TSKHRHPQKL VVFPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11324DKKKKKKKKKKP
21423KKKKKKKKKK
31523KKKKKKKKK
41723KKKKKKK
54044RKRKK
64260RKKASEPVNSPERAKKKKK
75359ERAKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapORGLA09G0000200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723860.0AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610937.10.0probable transcription factor At2g01370 isoform X5
TrEMBLI1QLS30.0I1QLS3_ORYGL; Uncharacterized protein
STRINGORGLA09G0000200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-11DNA-binding storekeeper protein-related transcriptional regulator