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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA08G0227400.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
NAC |
Protein Properties |
Length: 232aa MW: 24835.4 Da PI: 10.2589 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA08G0227400.1 | genome | AGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 97.9 | 1.5e-30 | 19 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdk 90
lppGfrFhPtdeelvv+yL++k+ g +l++ vi+++ +++k++Pwd+p + +++ + yfF+ r +++ +g+r++ +++ g Wk a g+dk
ORGLA08G0227400.1 19 LPPGFRFHPTDEELVVQYLRRKAFGMPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPHAA-RGRRQQVTASGGCWKqAGGRDK 106
79****************************.8899998***********43..456789*****99875.68899999999****4556899 PP
NAM 91 evlsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
+v+++ +++lvg+kk +vf + a + Wvmhey+l
ORGLA08G0227400.1 107 PVVVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWVMHEYSL 155
999988988999**********8854433222333333667******97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MERAAAAAPV VMRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGMPLPAAV IPDLHNLFKL 60 DPWDIPGASS DGDKYFFAVR PHAARGRRQQ VTASGGCWKQ AGGRDKPVVV ARCGGSHLVG 120 VKKGMVFVPR QGRKAPAAAA AAAGGGCWVM HEYSLALPMH KKGCLAEAEE WVVCRIFQRS 180 SSGSRSPRRP DNDMRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-29 | 19 | 185 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-29 | 19 | 185 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-29 | 19 | 185 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK061543 | 0.0 | AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence. |
GenBank | AK068776 | 0.0 | AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence. |
GenBank | AK104766 | 0.0 | AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence. |
GenBank | EU846997 | 0.0 | EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds. |