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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
ORGLA08G0227000.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
CO-like |
Protein Properties |
Length: 496aa MW: 52383.3 Da PI: 6.4406 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
ORGLA08G0227000.1 | genome | AGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 19.9 | 1.6e-06 | 14 | 55 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
+++ C+ ++e + l+C+ + lC C + H H
ORGLA08G0227000.1 14 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 55
7899*******9******************999545555555 PP
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2 | CCT | 63.3 | 7.3e-22 | 444 | 487 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R++a++RY+eK+k+R++eK+irYesRK +A++R+RvKGrFvk++
ORGLA08G0227000.1 444 RDNAMQRYREKKKNRRYEKHIRYESRKLRADTRKRVKGRFVKSN 487
899**************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 496 aa
Download sequence Send
to blast |
MKDGGGGGGR GQQQQWPCDY CGEAAAALHC RADAARLCVA CDRHVHAANA LSRKHVRAPL 60 CAACAARPAA ARVASASAPA FLCADCDTGC GGDDGAALRV PVEGFSGCPA AAELAASWGL 120 DLPGGCGGEE EEADDAFFSA LDYSMLAVDP VLRDLYVPCD PPEVVVAGGG GRRLKGEALG 180 HQLAEMARRE AETAHPHTQP HSDLSPRTPR RTSAAASGRL QEKQAPPPLP HAAATAAAAA 240 AAPEAPLPYT SLLMMAPANC TELMENDRVG DEDENVLWES TAPSVPPTQI WDFNLGKSRD 300 HNENSALEVG FGSNNGGFMI KSYNDMLKEI SSGTTKDLED IYDSRYCAAA EDIMSTNVCQ 360 LSSKNPSTGS NKRKASSCAS TIDGPTTSTS HVPAASGALG GSSNDRGSAL PKEISFCDQT 420 VVPTGADQRP CTIKIDSETL AQNRDNAMQR YREKKKNRRY EKHIRYESRK LRADTRKRVK 480 GRFVKSNGAH DVSNGG
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G28050.1 | 5e-17 | B-box type zinc finger protein with CCT domain |